PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462873952
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 326aa    MW: 34047.9 Da    PI: 7.8784
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462873952genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.14.2e-24119178258
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                +D ++WrKYGqK++++s++prsYYrCt+    gC++kk+v+ s+++p   +i Y g+H++
  462873952 119 EDNHAWRKYGQKNIQESHNPRSYYRCTHMtdqGCKAKKQVQVSETNPLEYIISYFGQHTC 178
                8**************************988889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-25105180IPR003657WRKY domain
SuperFamilySSF1182901.7E-23112180IPR003657WRKY domain
PROSITE profilePS5081121.54113181IPR003657WRKY domain
SMARTSM007744.9E-33118180IPR003657WRKY domain
PfamPF031064.6E-22119178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MASSGSSDDR SSPAPSAVVE GLIGVRDRVV MLQTMLDGSP TPLRAAGTEL TEGMMSSLSS  60
ALSALNTFGG GNGGASSSAG GRRRKKAAAV AGPHRRTSSS CRRRTQSPLV KTVTATKLED  120
NHAWRKYGQK NIQESHNPRS YYRCTHMTDQ GCKAKKQVQV SETNPLEYII SYFGQHTCCD  180
PSTIPLITDA TTAAPANFIS FGSTVNGAPT SSAHAIIPRH QAAVNPIMML SRFSYSSSLP  240
AQERCGSEEA ISSFSPAGEL SAVVGSAGKT STTTVGSAPE QWLGGASHMA GGIDTAGSFP  300
SSPSSHELMT GSFDGILDDD MFGFDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-21112178268OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462873952
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958704.11e-89probable WRKY transcription factor 38
TrEMBLK3ZUW43e-88K3ZUW4_SETIT; Uncharacterized protein
STRINGSi030395m5e-89(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125272837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.19e-21WRKY DNA-binding protein 46