PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462874299

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LSD

Protein Properties

Length: 175aa MW: 18182 Da PI: 8.3204

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462874299	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.7	1.6e-12	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrt+L YP GApsV+Ca+C+++ 462874299 7 CRGCRTVLLYPQGAPSVCCAVCQAI 31 9**********************97 PP
2	zf-LSD1	42.4	1.1e-13	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A VRC++C+tV 462874299 46 CGGCRTLLMYTRNADTVRCSCCHTV 70 ************************9 PP
3	zf-LSD1	48.1	1.9e-15	84	107	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+C+t+L+YP+GApsV+Ca+C+ 462874299 84 CGQCGTTLMYPYGAPSVKCAICNY 107 **********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.1E-11	4	34	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.0E-10	7	31	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.9E-15	43	73	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.7E-11	46	70	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.4E-10	81	109	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.7E-14	84	108	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MQSQIVCRGC RTVLLYPQGA PSVCCAVCQA ITTVPPPGLE MAQLICGGCR TLLMYTRNAD 60 TVRCSCCHTV NLVRPVNNVA HVNCGQCGTT LMYPYGAPSV KCAICNYITT TGINTVATSS 120 SATPASNGSS YSASSTSAPK SQPPNVTVVV ENPMTVDEKG KLVSNVVVGV TTGRN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462874299

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982348.1	1e-104	protein LOL3
Swissprot	Q6ASS2	2e-95	LOL3_ORYSJ; Protein LOL3
TrEMBL	K4AE78	1e-103	K4AE78_SETIT; Uncharacterized protein
STRING	Si037185m	1e-104	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	2e-54	lsd one like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]