PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462874609

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Dof

Protein Properties

Length: 286aa MW: 31104.8 Da PI: 8.4931

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462874609	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2e-39	70	128	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++alkcprC+s+ntkfCyynnysl qPryfCkaCrryWt+GG+lrnvPvGgg+rknk+ 462874609 70 DEALKCPRCESSNTKFCYYNNYSLLQPRYFCKACRRYWTQGGSLRNVPVGGGCRKNKRC 128 7899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-26	64	127	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.3E-33	71	127	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.068	73	127	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	75	111	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MDMKMISNQA SNTAASAHQH QNQDQDQPQH QHQQADAGMG APAEEERKTQ RQKQQLAGGG 60 GENRPRPHLD EALKCPRCES SNTKFCYYNN YSLLQPRYFC KACRRYWTQG GSLRNVPVGG 120 GCRKNKRCSL SSSTAPPSNS SVRLVPASSM GFPNVLPTFM STSGFEVPHL SLPFVPPLSL 180 SNLAPTPVLA PVASPTTPFS FMDILRGGLF DNQSNNFYGP TTTGHSNGME MLMPPSFSFD 240 IKQQHGVIGD HHEGVRGTIE GGKWLMTQHE VNNGGGGATR SEGGKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462874609

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002448852.1	3e-58	dof zinc finger protein PBF
Swissprot	O24463	2e-54	PBF_MAIZE; Dof zinc finger protein PBF
STRING	Sb05g000310.1	1e-57	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	3e-35	Dof family protein

Publications ? help Back to Top
Lang Z, et al. Defining the Role of prolamin-box binding factor1 Gene During Maize Domestication. J. Hered., 2014 Jul-Aug. 105(4): p. 576-582 [PMID:24683184] Zhang Z,Zheng X,Yang J,Messing J,Wu Y Maize endosperm-specific transcription factors O2 and PBF network the regulation of protein and starch synthesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(39): p. 10842-7 [PMID:27621432]