PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462875124
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 191aa    MW: 20832.1 Da    PI: 5.0644
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462875124genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.76.1e-135191145
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAaka 45
               + ykGVr +   grWv+e+r+p   g r+r +lg+f tae+Aa+a
  462875124 51 PVYKGVRSRN-PGRWVCEVREP--HG-RQRLWLGTFQTAEMAAQA 91
               68****9666.9******9996..33.5***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.1E-85191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-185294IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-125295IPR016177DNA-binding domain
SMARTSM003803.1E-852114IPR001471AP2/ERF domain
PROSITE profilePS5103215.23752113IPR001471AP2/ERF domain
PRINTSPR003672.2E-75364IPR001471AP2/ERF domain
CDDcd000185.53E-145391No hitNo description
PRINTSPR003672.2E-77591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDWAYSGTGY YYSSSPPAAV GGGDEDAYMT VSSAPPKRRA GRTKFKETRH PVYKGVRSRN  60
PGRWVCEVRE PHGRQRLWLG TFQTAEMAAQ APRAAGHDEI RRAAVEAAEL FRPQPDAAAA  120
AAAAAAEATV VAGPGVPRSA ELGASYPGED WLEFEMHGYF EMVQGTLIDM PPQPSAWTED  180
DYACDVSLWS Y
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462875124
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560447e-86EU956044.1 Zea mays clone 1556129 dehydration-responsive element-binding protein 1D mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147630.13e-81dehydration-responsive element-binding protein 1D
SwissprotA2XWL68e-69DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E
SwissprotQ8H2738e-69DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E
TrEMBLB6STH96e-80B6STH9_MAIZE; Dehydration-responsive element-binding protein 1D
STRINGGRMZM2G042756_P011e-80(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-30C-repeat-binding factor 4
Publications ? help Back to Top
  1. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]
  2. Li S, et al.
    Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice.
    Front Plant Sci, 2016. 7: p. 465
    [PMID:27148296]