PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462875262

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WRKY

Protein Properties

Length: 209aa MW: 23605.2 Da PI: 9.5201

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462875262	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.6	4.1e-31	138	196	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+s+gC+vkk+ver+++d+++v++tY g Hnh+ 462875262 138 LDDGYRWRKYGKKMVKNSPNPRNYYRCSSEGCHVKKRVERERDDERFVITTYDGVHNHP 196 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.9E-33	124	197	IPR003657	WRKY domain
SuperFamily	SSF118290	8.76E-28	131	197	IPR003657	WRKY domain
PROSITE profile	PS50811	31.559	133	198	IPR003657	WRKY domain
SMART	SM00774	9.9E-36	138	197	IPR003657	WRKY domain
Pfam	PF03106	2.1E-24	139	196	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
SSDRRRCRRR TRLSYPRARR IGSYLSFAAD VPEECYYHSP EAAVAAAFHS ERQGLLGALQ 60 EDDVDYSVMS GEAGSNGGRE ASEQSQTDAS TVLRPAGLAI RDTMINEGVS SGDDGRMSLP 120 TGRRGRIAFK TRSDVEVLDD GYRWRKYGKK MVKNSPNPRN YYRCSSEGCH VKKRVERERD 180 DERFVITTYD GVHNHPAVPL PHHRRPINS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-25	122	195	1	74	Probable WRKY transcription factor 4
2lex_A	4e-25	122	195	1	74	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462875262

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR827403	4e-60	KR827403.1 Triticum aestivum WRKY52 transcriptional factor mRNA, complete cds.
GenBank	KT728909	4e-60	KT728909.1 Triticum aestivum clone LKc001 WRKY protein mRNA, partial cds.
GenBank	KT728910	4e-60	KT728910.1 Triticum aestivum clone LKc002 WRKY protein mRNA, partial cds.
GenBank	KT865877	4e-60	KT865877.1 Triticum aestivum clone KL04 WRKY mRNA, partial cds.
GenBank	KT865878	4e-60	KT865878.1 Triticum aestivum clone KL05 WRKY mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969405.1	2e-51	probable WRKY transcription factor 50
Swissprot	Q8VWQ5	2e-38	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A3L6ST74	5e-50	A0A3L6ST74_PANMI; Putative WRKY transcription factor 50
STRING	Pavir.Eb02454.1.p	5e-53	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	2e-31	WRKY DNA-binding protein 50

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]