PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462875559

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

G2-like

Protein Properties

Length: 474aa MW: 52121 Da PI: 6.6188

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462875559	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.8	4.3e-32	267	321	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt eLHerFveav++L G+ekAtPk +l+lmkv+gLt++hvkSHLQkYRl 462875559 267 KTRLRWTLELHERFVEAVNKLDGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRL 321 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.48E-17	264	321	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.574	264	324	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-30	265	322	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-24	267	322	IPR006447	Myb domain, plants
Pfam	PF00249	3.8E-8	269	320	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-21	358	404	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MSSQSFVTVK QMAAPDKTVH ASTSTQPLVH KLLDAKLDHQ VLVDDTLSST SQSSSIKTEL 60 MRSSSFSKSL TLNLQKRSPD TDPESPLSHV SHPNFSDPIP SNSSTFCTSL FSSSLSNPEP 120 TRQIGTLPFL PHPPKCEQQV SAGQSSSSSL LLSGDISNSI DESEHSDDLK DLLNLSGDGS 180 DGSYHGENNA LAFAEHMEFQ FLSEQLGIAI TDNEESPRLD DIYGTPPQFS SLPVSSCSNQ 240 SIQNPGSPVK VQLNSPRSSS GSATTNKTRL RWTLELHERF VEAVNKLDGP EKATPKGVLK 300 LMKVEGLTIY HVKSHLQKYR LAKYLPETKE DKKAPSEDKK AQSKTYIAYL HMFHRNLQVA 360 EALRMQMEVQ RQLHEQLEVQ RQLQLRIEEH ARYLQKLLEE QQKAGNSLSL KTPTEAQAES 420 PESTSKERGE SESGAASPQP SKKRAPDAEV ESKSPAGNKR TKVQVGSQSE ASCS

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MSSQSFVTVK QMAAPDKTVH ASTSTQPLVH KLLDAKLDHQ VLVDDTLSST SQSSSIKTEL  60
MRSSSFSKSL TLNLQKRSPD TDPESPLSHV SHPNFSDPIP SNSSTFCTSL FSSSLSNPEP  120
TRQIGTLPFL PHPPKCEQQV SAGQSSSSSL LLSGDISNSI DESEHSDDLK DLLNLSGDGS  180
DGSYHGENNA LAFAEHMEFQ FLSEQLGIAI TDNEESPRLD DIYGTPPQFS SLPVSSCSNQ  240
SIQNPGSPVK VQLNSPRSSS GSATTNKTRL RWTLELHERF VEAVNKLDGP EKATPKGVLK  300
LMKVEGLTIY HVKSHLQKYR LAKYLPETKE DKKAPSEDKK AQSKTYIAYL HMFHRNLQVA  360
EALRMQMEVQ RQLHEQLEVQ RQLQLRIEEH ARYLQKLLEE QQKAGNSLSL KTPTEAQAES  420
PESTSKERGE SESGAASPQP SKKRAPDAEV ESKSPAGNKR TKVQVGSQSE ASCS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-25	267	324	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-25	267	324	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-25	267	324	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-25	267	324	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-25	267	324	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-25	267	324	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-25	267	324	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-25	267	324	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462875559

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812859.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3
Refseq	XP_025812860.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3
Refseq	XP_025812862.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3
Refseq	XP_025812863.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3
Swissprot	Q6YXZ4	1e-165	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	A0A3L6PFL7	0.0	A0A3L6PFL7_PANMI; Uncharacterized protein
STRING	Pavir.J27649.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4526	37	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	6e-72	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]