PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462875587
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 564aa    MW: 63089.9 Da    PI: 9.156
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462875587genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18127210179
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+
  462875587 127 FCKTLTASDTSTHGGFSVPRRSAEKIfppldfsM-QPPA-QEIQARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDS 210
                99*****************************954.4444.48*******************************************8 PP
2Auxin_resp119.62.4e-39296379183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+++YnPras++eFvv+++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
   462875587 296 AAHAAANNSPFTIFYNPRASPTEFVVPFAKYQKALYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 379
                 79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.88E-35116210IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-32119210IPR015300DNA-binding pseudobarrel domain
CDDcd100175.15E-17126210No hitNo description
PROSITE profilePS508639.079127240IPR003340B3 DNA binding domain
PfamPF023622.3E-16127210IPR003340B3 DNA binding domain
SMARTSM010191.4E-12127226IPR003340B3 DNA binding domain
SuperFamilySSF1019361.06E-13222262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-9225263IPR015300DNA-binding pseudobarrel domain
PfamPF065074.2E-34296379IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MMKQQQQPAS SAGEKKAPTI NSELWHACAG PLVSLPPAGS LVVYFPQGHS EQVAASMQKD  60
VDAHVPSYPN LPSKLICLLH NVTLHADPET DEVYAQMTLQ PVTSYGKEAL QLSELALKQP  120
RPQTEFFCKT LTASDTSTHG GFSVPRRSAE KIFPPLDFSM QPPAQEIQAR DLHDNIWTFR  180
HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS YGKEALQLSE LALKQPRPQT EFFCKTLTAS  240
DTSTHGGFSV PRRSAEKIFP PLQLLLGIRR ANRQPTNISS SVLSSDSMHI GILAAAAHAA  300
ANNSPFTIFY NPRASPTEFV VPFAKYQKAL YGNQISLGMR FRMMFETEEL GTRRYMGTIT  360
GISDLDPVRW KNSQWRNLQV GWDESAAGER RNRVSIWEIE PVAAPFFICP PPFFGAKRPR  420
QLDDESSEME NLLKRAMPWL GEEICIKDPQ TQNTIMPGLS LVQWMNMNMQ QNSSFANTAV  480
QSEYLRSLSN PNMQNLGASD LSRQLCLQNQ ILQQNNIQFN SPKLPQQMQP INELPKAALA  540
QNQLASNHKN RLKSLAICRG SNSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-159140033388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462875587
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966097.10.0auxin response factor 19 isoform X1
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A368QXM80.0A0A368QXM8_SETIT; Auxin response factor
STRINGPavir.J00164.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]