PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462875647

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

MYB

Protein Properties

Length: 223aa MW: 25888.2 Da PI: 10.4743

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462875647	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.1	2.7e-15	14	76	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...............TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...............kgRtlkqcksrwqkyl 48 +g+WT+eEde+l++++++ G g+W+t +r g ++R++k+c++rw +yl 462875647 14 KGPWTPEEDEKLLQYIQKNGHGSWRTLPRLAGtgilnrctstaaafrLNRCGKSCRLRWTNYL 76 79***********************************************************97 PP
2	Myb_DNA-binding	55.1	1.8e-17	82	127	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia +++ gRt++++k++w+++l 462875647 82 RGKFSQEEEQTILHLHSVLGNK-WSAIATHLP-GRTDNEIKNFWNTHL 127 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-23	5	79	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.948	9	76	IPR017930	Myb domain
SuperFamily	SSF46689	3.41E-29	11	123	IPR009057	Homeodomain-like
SMART	SM00717	7.1E-13	13	78	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-14	14	76	IPR001005	SANT/Myb domain
CDD	cd00167	3.72E-9	16	76	No hit	No description
PROSITE profile	PS51294	26.678	77	131	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.5E-28	80	132	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-16	81	129	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-16	82	127	IPR001005	SANT/Myb domain
CDD	cd00167	1.75E-11	84	127	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MGRSPCCDES GLKKGPWTPE EDEKLLQYIQ KNGHGSWRTL PRLAGTGILN RCTSTAAAFR 60 LNRCGKSCRL RWTNYLRPDI KRGKFSQEEE QTILHLHSVL GNKWSAIATH LPGRTDNEIK 120 NFWNTHLKKR LIQMGFDPMT HRPRTDFFAA LPQLIALXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-26	12	131	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462875647

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728309	1e-128	KJ728309.1 Zea mays clone pUT6589 MYB transcription factor (MYB63) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820029.1	1e-98	transcription factor MYB93-like
Swissprot	Q9S9Z2	2e-87	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A3L6RM24	5e-98	A0A3L6RM24_PANMI; Myb-related protein Hv33-like
STRING	Pavir.Fa00604.1.p	1e-97	(Panicum virgatum)
STRING	OS08T0486300-00	4e-97	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1126	37	132

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	9e-90	myb domain protein 93

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]