PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462875775

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

G2-like

Protein Properties

Length: 502aa MW: 53937.6 Da PI: 10.4302

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462875775	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.7	4.8e-32	331	386	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 kpr++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ 462875775 331 KPRRCWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 386 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.454	328	388	IPR017930	Myb domain
SuperFamily	SSF46689	3.07E-17	329	389	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-28	329	389	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.5E-27	331	386	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-6	333	384	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
GIPRRIFTYA RSISFRPSVP IHHPHTTLLR LLAAFLCKNK SRKIRFLRDA PTPIPCLLPC 60 LVVSFPLSLP HGACRTTTTG GQSSPFTPPA GAAAASTCSR WRRSAARSRS SSASCPSVST 120 SSRRVRSHDL ASQLLSRLLL HVRPIERMRS QMDGVCSEET VSDHGPVLEE FMPLKPSLSR 180 PRAPPAGGVV VGKKEEDAPD HTRPETKKAM PDWLQSVQLW SQEPGQHQRA SSPHKELLPC 240 KPVARKAGGA FHPFEKEKRG VELPASSTTA AASSVVVGDS SGDNKAISVD DDDDTEKHNS 300 DKQEEASNNK DTASKDNKSK DKEGQSSSNR KPRRCWAPEL HRRFLQALQQ LGGSHVATPK 360 QIRELMKVDG LTNDEVKSHL QKYRLHTRRP NSTVQNTSAS AAPPAPQFVV VGGIWVPPPE 420 YAAAAAAAQP SVQLAADASG NASTVYAPVA TLPSGTQPQS QQKPQLIQRQ PSRCSDGRPS 480 GSAGDASSAS PAVSSSSQTT SP

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

GIPRRIFTYA RSISFRPSVP IHHPHTTLLR LLAAFLCKNK SRKIRFLRDA PTPIPCLLPC  60
LVVSFPLSLP HGACRTTTTG GQSSPFTPPA GAAAASTCSR WRRSAARSRS SSASCPSVST  120
SSRRVRSHDL ASQLLSRLLL HVRPIERMRS QMDGVCSEET VSDHGPVLEE FMPLKPSLSR  180
PRAPPAGGVV VGKKEEDAPD HTRPETKKAM PDWLQSVQLW SQEPGQHQRA SSPHKELLPC  240
KPVARKAGGA FHPFEKEKRG VELPASSTTA AASSVVVGDS SGDNKAISVD DDDDTEKHNS  300
DKQEEASNNK DTASKDNKSK DKEGQSSSNR KPRRCWAPEL HRRFLQALQQ LGGSHVATPK  360
QIRELMKVDG LTNDEVKSHL QKYRLHTRRP NSTVQNTSAS AAPPAPQFVV VGGIWVPPPE  420
YAAAAAAAQP SVQLAADASG NASTVYAPVA TLPSGTQPQS QQKPQLIQRQ PSRCSDGRPS  480
GSAGDASSAS PAVSSSSQTT SP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-13	331	384	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-13	331	384	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-13	331	384	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-13	331	384	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462875775

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate. {ECO:0000269\|PubMed:23324170}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP091266	9e-94	FP091266.1 Phyllostachys edulis cDNA clone: bphylf038j06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004954868.3	1e-128	transcription factor NIGT1
Swissprot	Q6Z869	1e-100	NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBL	A0A0A9G3F3	1e-145	A0A0A9G3F3_ARUDO; Uncharacterized protein
STRING	Si019945m	1e-131	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6470	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	2e-49	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sawaki N, et al. A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice. Plant Cell Physiol., 2013. 54(4): p. 506-17 [PMID:23324170]