PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462875844
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 547aa    MW: 60181.2 Da    PI: 6.2549
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462875844genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS439.91.8e-1341775461373
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l+elL++cA+av+++++ +++ ++ +l++++s +g+p++Rl ay++e+L arla s++++ykal+++e +    +e l+++++++e++P++kf+++ aN 
  462875844 177 LKELLITCARAVEENNNFAINLMIPELRKMVSVSGEPLERLGAYMVEGLVARLAASGNSIYKALKCKEPK---GAELLSYMHFLYEACPYFKFGYMSANG 273
                5799*****************************************************************9...9************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                aI eav+ge+r+HiiDf i qG+QW++LlqaLa+Rp+gpp +RiTg++++ s   +   le +g+rL+++A+ ++vpfef++ va + +d+e+e+L + p
  462875844 274 AIAEAVKGEDRIHIIDFHIAQGAQWISLLQALAARPGGPPFVRITGIDDSFSAyaRGGGLELVGKRLSQIAAMCKVPFEFHA-VAISGNDIEVEHLGIIP 372
                *************************************************777688999************************.6889************* PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                 Ea+aVn+ l+lh+++de+vs++++rd++L+lvkslsPkv+++veqe+++n+++F++rf+e+l+yy+a+f+s++  l+r+++eri++E+++l+reivn+v
  462875844 373 AEAVAVNFTLELHHIPDETVSTANHRDRILRLVKSLSPKVLTLVEQESNTNTAPFAQRFAETLDYYTAIFESIDLALARDDKERINMEQHCLAREIVNLV 472
                **************************************************************************************************** PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                aceg+er+erhe ++kW++rl++aGF+p pls  +++++k+ll+ ++ + y++ e++g+l+lgWk+rpLv+ SaW
  462875844 473 ACEGEERVERHEVFGKWKARLMMAGFRPSPLSALVNATIKTLLQSYSPN-YKLLERDGALFLGWKNRPLVVSSAW 546
                ***********************************************55.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.505151528IPR005202Transcription factor GRAS
PfamPF035146.2E-132177546IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MADTPTSRMV HPFGNVPRQT PKQFLFSGNS QHLYNPYQSA GDSHVVPQHH YNMKSHSPDS  60
GSESHETHQQ YTLDSSAGSG CMRHDSPSGH SLTTGSGSPL SQEDSHSGST NGNGSPVSAS  120
CVTEDPNDLK QKLKDLEAAM LGTDLEAVNS LELSVANQLS LEPEEWVHMM SMPRGNLKEL  180
LITCARAVEE NNNFAINLMI PELRKMVSVS GEPLERLGAY MVEGLVARLA ASGNSIYKAL  240
KCKEPKGAEL LSYMHFLYEA CPYFKFGYMS ANGAIAEAVK GEDRIHIIDF HIAQGAQWIS  300
LLQALAARPG GPPFVRITGI DDSFSAYARG GGLELVGKRL SQIAAMCKVP FEFHAVAISG  360
NDIEVEHLGI IPAEAVAVNF TLELHHIPDE TVSTANHRDR ILRLVKSLSP KVLTLVEQES  420
NTNTAPFAQR FAETLDYYTA IFESIDLALA RDDKERINME QHCLAREIVN LVACEGEERV  480
ERHEVFGKWK ARLMMAGFRP SPLSALVNAT IKTLLQSYSP NYKLLERDGA LFLGWKNRPL  540
VVSSAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-661815478375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462875844
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958142.10.0chitin-inducible gibberellin-responsive protein 2
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A1E5VF810.0A0A1E5VF81_9POAL; Chitin-inducible gibberellin-responsive protein 2
STRINGSi029418m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]