PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462876231

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

YABBY

Protein Properties

Length: 228aa MW: 24331.6 Da PI: 6.867

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462876231	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	165.7	3.3e-51	22	202	6	159
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas......qllaaeshldeslkee...................lleelkveee 80 eq+Cyv+Cn+C+tilav vP +slfk+vtvrCGhC++l+svnl q l + ll ++ ++ 462876231 22 EQEQLCYVNCNYCDTILAVGVPCSSLFKTVTVRCGHCANLFSVNLCSLLlpppanQ-------LPFGQAPLlsptsphnlldelsfqapsLLSAEQAASP 114 579****************************************98874444431.......3332222244455556666677777776666666666 PP YABBY 81 nlksnvekeesastsvssekl........senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 ++++ +++++++s +s++ + +e +++p+ +r ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaakn 462876231 115 TVSVSTITSSNNSCGNSMSAMsiapppkpAPQEPQQLPKSATsGNRTTEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKN 202 66666666666666666666667999887566677777766558*****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.6E-58	22	202	IPR006780	YABBY protein
SuperFamily	SSF47095	2.39E-5	155	200	IPR009071	High mobility group box domain
CDD	cd00084	5.07E-4	167	194	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MSSVTETFSM DQHFVQPPPA AEQEQLCYVN CNYCDTILAV GVPCSSLFKT VTVRCGHCAN 60 LFSVNLCSLL LPPPANQLPF GQAPLLSPTS PHNLLDELSF QAPSLLSAEQ AASPTVSVST 120 ITSSNNSCGN SMSAMSIAPP PKPAPQEPQQ LPKSATSGNR TTEKRQRVPS AYNRFIKDEI 180 QRIKASNPDI THREAFSAAA KNDGGECLLF KDGLYAAAAA SGMRIAPY

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462876231

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB274017	4e-66	AB274017.1 Oryza sativa Japonica Group OsYABBY5 mRNA for OsYABBY5 protein, complete cds.
GenBank	AK070205	4e-66	AK070205.1 Oryza sativa Japonica Group cDNA clone:J023042I23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976365.1	1e-102	protein YABBY 5
Swissprot	Q01JG2	2e-87	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	2e-87	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	A0A0A9NXW5	1e-106	A0A0A9NXW5_ARUDO; ZYB14
STRING	Si010859m	1e-101	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	3e-44	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]