PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462876522

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

ZF-HD

Protein Properties

Length: 155aa MW: 17081.8 Da PI: 9.179

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462876522	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	87.6	1.3e-27	42	91	5	57
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +Y eCl+NhAas Gg ++DGCgEfmp+ + a+ l+CaACgCHR+FHRr v 462876522 42 VYLECLRNHAASAGGLVLDGCGEFMPAADP---ASLLRCAACGCHRSFHRRAV 91 79**********************9333...4678************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.0E-23	42	90	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	23.798	43	90	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.9E-24	43	90	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-13	43	89	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.17E-10	101	151	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-20	101	151	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.8E-19	102	148	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MDVKYSKPAL FQRDGKVEAT KKLEPVPAWA WGRATAIEPA GVYLECLRNH AASAGGLVLD 60 GCGEFMPAAD PASLLRCAAC GCHRSFHRRA VVALGLPPPP PEQKERMRAL SERMGWRLQK 120 RDEAAVEGCC REIGVTRGVF KVWMHNNKHN FGLSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	1e-15	102	150	27	75	ZF-HD homeobox family protein
1wh7_A	1e-15	100	150	25	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462876522

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK288007	8e-42	AK288007.1 Oryza sativa Japonica Group cDNA, clone: J075112P06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009593275.1	2e-36	PREDICTED: zinc-finger homeodomain protein 10-like isoform X1
Refseq	XP_016471282.1	2e-36	PREDICTED: zinc-finger homeodomain protein 10-like
Refseq	XP_018624241.1	1e-36	PREDICTED: zinc-finger homeodomain protein 10-like isoform X2
Swissprot	Q9SB61	2e-31	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A0E0QRE2	1e-42	A0A0E0QRE2_ORYRU; Uncharacterized protein
TrEMBL	M0T3L8	1e-42	M0T3L8_MUSAM; Uncharacterized protein
STRING	ORUFI09G10950.1	2e-43	(Oryza rufipogon)
STRING	GSMUA_Achr6P02700_001	2e-43	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3646	33	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60480.1	3e-22	homeobox protein 26

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]