PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462876817
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family TCP
Protein Properties Length: 103aa    MW: 10561.8 Da    PI: 4.176
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462876817genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP683.2e-212542877
        TCP 28 caarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaes 77
               +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tg++ +++++     +++
  462876817  2 VAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGSGVTPEEAPpaaVPVT 54
               8*************************************777774333222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136919.483136IPR017887Transcription factor TCP subgroup
PfamPF036343.7E-16244IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MVAARVFQLT RELGHRTDGE TIEWLLRQAE PSIIAATGSG VTPEEAPPAA VPVTHSPAAG  60
QGGAASAPYV PVPYYTALLM QPPPVEEPAA SASVSAATAE QND
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462876817
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727375e-64AK372737.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3010N16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581062.12e-42transcription factor PCF1
SwissprotO238757e-36PCF1_ORYSJ; Transcription factor PCF1
TrEMBLA0A0A9QH272e-44A0A0A9QH27_ARUDO; Uncharacterized protein
STRINGBRADI5G02880.17e-42(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141722627
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.12e-19TCP family protein