PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462876856

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

M-type_MADS

Protein Properties

Length: 80aa MW: 9014.57 Da PI: 10.5908

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462876856	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92	2.8e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRrng+lKKA E+SvLCdaev +ifss gkly+++s 462876856 9 KRIENSTNRQVTFSKRRNGLLKKAREISVLCDAEVGAVIFSSAGKLYDFCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.9E-42	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.983	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.25E-41	2	62	No hit	No description
SuperFamily	SSF55455	2.22E-30	2	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.5E-31	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.4E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.5E-31	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.5E-31	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRNGLLK KAREISVLCD AEVGAVIFSS AGKLYDFCSP 60 KTSYVPYLFP LRFPVPAFLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6bz1_A	6e-19	1	65	1	65	MEF2 CHIMERA
6bz1_B	6e-19	1	65	1	65	MEF2 CHIMERA
6bz1_C	6e-19	1	65	1	65	MEF2 CHIMERA
6bz1_D	6e-19	1	65	1	65	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269\|PubMed:14704206}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462876856

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP099210	2e-72	FP099210.1 Phyllostachys edulis cDNA clone: bphyem127e18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970811.1	2e-37	MADS-box transcription factor 2
Refseq	XP_025816957.1	2e-37	MADS-box transcription factor 2
Swissprot	Q40702	5e-37	MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBL	K3XMU3	4e-37	K3XMU3_SETIT; Uncharacterized protein
STRING	Sb03g041860.1	1e-37	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	2e-31	AGAMOUS-like 16

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]