PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462877051
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 602aa    MW: 67183.7 Da    PI: 4.6569
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462877051genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS407.21.5e-1242326021374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lL++cAea+s+ +  +aq+++a+l++ ++ +gdp qR+aay++e+Laa++++s++++y+al+++e++   +  +l+a+++++e++P++++++++aN 
  462877051 232 LKQLLFDCAEAISEYSIDEAQSIIAELRQKVAIQGDPSQRIAAYLVEGLAATIQSSGKGIYRALRCKEAP---TLYQLSAMQVLFEICPCYRLGFMAANY 328
                689******************************************************************9...89999********************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                aIlea +gee vHiiDfdi+qG Q+++L+q L s +++p +lRiTgv+++es+      l+ +g+rL+k+Ae +gv++ef++ va ++ dl++ +L ++p
  462877051 329 AILEACKGEEVVHIIDFDINQGSQYITLIQFLRSNSNKPRRLRITGVDDQESVnrAVGGLKVVGQRLEKLAEDCGVSLEFRA-VAANIGDLTPGMLVCRP 427
                *************************************************9998888899***********************.799************** PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                gEal+Vn+++ lh+l+desvs+ +erd++L++vk l+Pk+v++veqea++n+++Fl+rf+e  +yysalfdsl+a+lpres +r++vEr++l+reivn++
  462877051 428 GEALIVNFAFLLHHLPDESVSIVNERDQLLRMVKCLQPKLVTLVEQEANTNTSPFLTRFCEVYDYYSALFDSLDATLPRESPDRMNVERQCLAREIVNIL 527
                **************************************************************************************************** PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                aceg +r+er e ++kWr+r+++aGF p p+++++ + +++ l+ +  d y+ e+ ++ l +gW d++L++ SaW+
  462877051 528 ACEGPDRVERYEVAGKWRARMGMAGFVPSPFNTNVIDGIRSQLKSYC-DMYKFEKVHDGLHFGWGDKTLIVSSAWQ 602
                **********************************************9.66*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.93206583IPR005202Transcription factor GRAS
PfamPF035145.3E-122232602IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MGGAKASLIF SDSAMISQRD DFAVMVRLDA ASRLTWQVEN CERSMSFVRQ GDPSTSCAES  60
PYIHKFGPPN SGFSSQRFTP GAEVLLHGPL PYNAEAYRQS SFSGTPPPKY QKSVYSPDGH  120
FESHFDAVTY SPVTSNLSQQ NSQSVSENQI SDLEAEFGQD EMRLKLQELE HALFDDGDEV  180
FSDLSSINDE WNDQMKTNNE WTNTMQNILR PDSPKESSPE SSLSGPDISN GLKQLLFDCA  240
EAISEYSIDE AQSIIAELRQ KVAIQGDPSQ RIAAYLVEGL AATIQSSGKG IYRALRCKEA  300
PTLYQLSAMQ VLFEICPCYR LGFMAANYAI LEACKGEEVV HIIDFDINQG SQYITLIQFL  360
RSNSNKPRRL RITGVDDQES VNRAVGGLKV VGQRLEKLAE DCGVSLEFRA VAANIGDLTP  420
GMLVCRPGEA LIVNFAFLLH HLPDESVSIV NERDQLLRMV KCLQPKLVTL VEQEANTNTS  480
PFLTRFCEVY DYYSALFDSL DATLPRESPD RMNVERQCLA REIVNILACE GPDRVERYEV  540
AGKWRARMGM AGFVPSPFNT NVIDGIRSQL KSYCDMYKFE KVHDGLHFGW GDKTLIVSSA  600
WQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5623960126378Protein SCARECROW
5b3h_A1e-5623960125377Protein SCARECROW
5b3h_D1e-5623960125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462877051
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962026.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A3L6RAQ60.0A0A3L6RAQ6_PANMI; Scarecrow-like protein 1
STRINGPavir.J01797.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]