PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462877227
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 481aa    MW: 52706.4 Da    PI: 4.3051
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462877227genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-18125174255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+G+r+++ +g+W+AeIrdp++     r++lg+f t+e+Aa+a++  +++++g
  462877227 125 QYRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTFNTPEDAARAYDLEARRIRG 174
                69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.61E-30125184No hitNo description
SuperFamilySSF541717.19E-22125183IPR016177DNA-binding domain
SMARTSM003801.2E-35125188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-31125183IPR001471AP2/ERF domain
PROSITE profilePS5103224.144125182IPR001471AP2/ERF domain
PRINTSPR003671.2E-10126137IPR001471AP2/ERF domain
PfamPF008472.8E-11126174IPR001471AP2/ERF domain
PRINTSPR003671.2E-10148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MCWLPGAITT PVFAISIVGP SCNTLVVKAC SSAMCGGAIL SDLYSPARQT VTAGDLWADS  60
GKSKNGKNRK GKSSWEFDED DSDDFEADFE EFQDGDSEEE VDFVHQDKEI HIKNSKFGSR  120
KRKNQYRGIR RRPWGKWAAE IRDPRKGVRV WLGTFNTPED AARAYDLEAR RIRGKKAKVN  180
FPDTISKNKR RHPGPVARTA EKSINSSYHL SPAGSSTDLT VVKLELSESV PLPISGAGLD  240
ALDLSQLDGL RYLEDAGKDD AAGEFDGEAG EEDMVCANAE VKLADDFAYY EAYSNYMQLP  300
YLEGNSYENI DALFDGEAVQ DGVNVGGSST DLTVVKLELS ESVPLPISGA GLDALDLSQL  360
DGLRYLEDAG KDDAAGEFDG EAGEEDMVCA NAEVKLADDF AYYEAYSNYM QLPYLEGNSY  420
ENIDALFDGE AVQDGVNVGG CPSVGRGEPG FATVDCWRAL IPVDLRYYFK TIRVIRAKFV  480
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-19125186567ATERF1
3gcc_A4e-19125186567ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462877227
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698773.11e-116ethylene-responsive transcription factor ERF073
TrEMBLA0A1E5WNS81e-126A0A1E5WNS8_9POAL; Ethylene-responsive transcription factor 1
STRINGPavir.Ba00410.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145602123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.33e-34ERF family protein