PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462877364

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 226aa MW: 24692.1 Da PI: 8.5913

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462877364	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	84.5	2.1e-26	2	68	65	128
NAM 65 dkkyatgkrknratksgyWkatgkdkevlskkgel...vglkktLvfykgrapkgektdWvmheyrl 128 d+ky+tg r+nrat++gyWkatgkd+e++ + +++ g+kktLvfykgrapkg+kt+Wvmheyrl 462877364 2 DRKYPTGFRANRATEAGYWKATGKDREIYLEASSVpvlLGMKKTLVFYKGRAPKGVKTNWVMHEYRL 68 79**************************855546669************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	33.982	1	104	IPR003441	NAC domain
SuperFamily	SSF101941	2.62E-29	2	104	IPR003441	NAC domain
Pfam	PF02365	1.3E-11	11	68	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MDRKYPTGFR ANRATEAGYW KATGKDREIY LEASSVPVLL GMKKTLVFYK GRAPKGVKTN 60 WVMHEYRLDG QGRVPCAASS SNTKSKKPCS SSKEEWVVCR VFDKSLGVIR KEAESAPVPA 120 LVSTPPYRSN MSTGDTDLRS MNFPVPTQFP MGIQDFNMNS NGLHSIMGDS SASYYSADHM 180 GTSVPSPLLP SLLPMDVGVC PGQIDDADIS SVVNPRHVTS STEDMV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-23	2	105	80	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-23	2	105	80	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-23	2	105	80	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-23	2	105	80	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-23	2	105	83	169	NAC domain-containing protein 19
3swm_B	2e-23	2	105	83	169	NAC domain-containing protein 19
3swm_C	2e-23	2	105	83	169	NAC domain-containing protein 19
3swm_D	2e-23	2	105	83	169	NAC domain-containing protein 19
3swp_A	2e-23	2	105	83	169	NAC domain-containing protein 19
3swp_B	2e-23	2	105	83	169	NAC domain-containing protein 19
3swp_C	2e-23	2	105	83	169	NAC domain-containing protein 19
3swp_D	2e-23	2	105	83	169	NAC domain-containing protein 19
4dul_A	1e-23	2	105	80	166	NAC domain-containing protein 19
4dul_B	1e-23	2	105	80	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462877364

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025801540.1	3e-52	NAC domain-containing protein 79-like
Swissprot	Q9FLJ2	4e-37	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1E5V4C4	7e-57	A0A1E5V4C4_9POAL; NAC domain-containing protein 79
STRING	Si030284m	1e-49	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	7e-38	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]