PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462877528
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YB
Protein Properties Length: 176aa    MW: 19003.5 Da    PI: 5.798
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462877528genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1222.6e-381901794
      NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvts............easdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94
               mkk++Pan+ki+kdaket+qecvsefisfv               asdkcq+ekrktingddllwa+atlGfe+yv+plk yl+kyre+ 
  462877528  1 MKKAVPANGKIAKDAKETLQECVSEFISFVCVcfgdsdfggfafRASDKCQKEKRKTINGDDLLWAMATLGFEEYVDPLKNYLQKYREVS 90
               9****************************96322223333333369******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.4E-35194IPR009072Histone-fold
SuperFamilySSF471136.4E-25197IPR009072Histone-fold
PfamPF008083.3E-8131IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.2E-161937No hitNo description
PfamPF008085.1E-54367IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.2E-165068No hitNo description
PRINTSPR006155.2E-166987No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MKKAVPANGK IAKDAKETLQ ECVSEFISFV CVCFGDSDFG GFAFRASDKC QKEKRKTING  60
DDLLWAMATL GFEEYVDPLK NYLQKYREVS DGSSDCCVDG DSKLSTKGGE GSVKKDSISP  120
HGGTSSSTNQ HGIYNQGMGY MQPQGVPVPV LKDMVELLYG LQALPPGARG PNLQGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B7e-311881994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A7e-311881994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462877528
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703067e-52HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816143.14e-70nuclear transcription factor Y subunit B-3-like
SwissprotP252093e-57NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLA0A2S3HQA29e-69A0A2S3HQA2_9POAL; Uncharacterized protein
STRINGSi003159m2e-69(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.12e-43nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]