PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462878261
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YA
Protein Properties Length: 194aa    MW: 21462.2 Da    PI: 8.1001
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462878261genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA53.96e-17110147139
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpyl 39 
                +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +k+rk  l
  462878261 110 EEPVYVNAKQYNAILRRRQSRAKAESERKL-IKGRKVSL 147
                69****************************.99999655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.7E-9108168IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115217.116109144IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.4E-12111145IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860114134IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003677Molecular FunctionDNA binding
GO:0003677Molecular FunctionDNA binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MTSVVQSVSG DHRAEDQHQQ NKQKQAEPED QQEASVTSSG SQTMVGTPSA DYVAAYAPHD  60
MAHAMGQFAY PNVDPYYGSL YAAYGGQPMM HPPLVGMHPT GLPLPTDAIE EPVYVNAKQY  120
NAILRRRQSR AKAESERKLI KGRKVSLCNP LHSAMTWNSK LAVCVHDSGA NNQVNCRIYP  180
PYFRLKIDLP HVVL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462878261
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963231.11e-88nuclear transcription factor Y subunit A-7
TrEMBLA0A3L6RBK95e-90A0A3L6RBK9_PANMI; Nuclear transcription factor Y subunit A-7
STRINGPavir.J06031.1.p2e-90(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65553853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.27e-24nuclear factor Y, subunit A7