PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462878284
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family LSD
Protein Properties Length: 150aa    MW: 16044.5 Da    PI: 7.9877
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462878284genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD144.62.4e-144670125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               CggC+tlL+Y+r+A+ VRC++CdtV
  462878284 46 CGGCQTLLMYTRNATTVRCSCCDTV 70
               ************************9 PP
2zf-LSD151.22e-1684108125
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                Cg+C+t+L+YP+GApsV+Ca+C+++
  462878284  84 CGQCQTVLMYPYGAPSVKCAICNFI 108
                ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.7E-134473IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-114670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.6E-1281110IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-1484108IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MGAEAFYSTR EAPLACAAQF AMRSPACHLQ NEQYSCAGME MSRLICGGCQ TLLMYTRNAT  60
TVRCSCCDTV NLVRQVSSIA HVNCGQCQTV LMYPYGAPSV KCAICNFITN VGPTNQSQNV  120
TVVVENPMTV DEKGKLVSNV VVGVTTGGKK
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462878284
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3146999e-85KF314699.1 Setaria italica clone Si18S 18S ribosomal RNA gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805781.17e-68protein LOL2-like isoform X2
SwissprotQ2QMB37e-67LOL2_ORYSJ; Protein LOL2
TrEMBLA0A0E0MPG93e-69A0A0E0MPG9_ORYPU; Uncharacterized protein
STRINGOMERI12G13090.16e-70(Oryza meridionalis)
STRINGOPUNC12G16710.16e-70(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.12e-32lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]