PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462878585

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C2H2

Protein Properties

Length: 437aa MW: 48712.3 Da PI: 8.4144

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462878585	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4e-05	184	203	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ 462878585 184 FSCPVCFKTFNRYNNMQMHM 203 89*****************9 PP
2	zf-C2H2	12.5	0.00046	348	368	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F k + ++H +++ 462878585 348 CRKCGKAFAVKGDWRTHEKNC 368 *****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.64	184	211	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.38	184	206	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.5E-6	184	203	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	186	206	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.78E-6	329	366	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.7E-5	333	366	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	82	346	366	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.621	346	366	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	372	395	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MEDPYMSLFK NPYYYYTSSF PAAPPAAHHL PPSLPPYTSL YPATVAASAP HYSYQAAFFH 60 PPPTTLPPLD DSPPSPPLPR ALPLLSSSPT RRCCASRRNV DAADSDSDDD ADVDFLREAA 120 DLLSGLSDRA IGVDGEEEDE EECKVDTGDE VVPLGFASTP IGRLNKGQYW IPTPAQILIG 180 PTQFSCPVCF KTFNRYNNMQ MHMWGHGSQY RKGPESLRGV QPTAMLRLPC YCCAPGCRNN 240 IDHPRSRPLK DFRTLQTHYK RKHGLKPFLC RKCGKAFAMH MWGHGSQYRK GPESLRGVQP 300 TAMLRLPCYC CAPGCRNNID HPRSRPLKDF RTLQTHYKRK HGLKPFLCRK CGKAFAVKGD 360 WRTHEKNCGK LWYCLCGSEF KHKRSLKDHA RAFGHGHGAF GCNVDGGDGL EDDDEGAVSE 420 IEQDCAAGSC RSARSAR

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MEDPYMSLFK NPYYYYTSSF PAAPPAAHHL PPSLPPYTSL YPATVAASAP HYSYQAAFFH  60
PPPTTLPPLD DSPPSPPLPR ALPLLSSSPT RRCCASRRNV DAADSDSDDD ADVDFLREAA  120
DLLSGLSDRA IGVDGEEEDE EECKVDTGDE VVPLGFASTP IGRLNKGQYW IPTPAQILIG  180
PTQFSCPVCF KTFNRYNNMQ MHMWGHGSQY RKGPESLRGV QPTAMLRLPC YCCAPGCRNN  240
IDHPRSRPLK DFRTLQTHYK RKHGLKPFLC RKCGKAFAMH MWGHGSQYRK GPESLRGVQP  300
TAMLRLPCYC CAPGCRNNID HPRSRPLKDF RTLQTHYKRK HGLKPFLCRK CGKAFAVKGD  360
WRTHEKNCGK LWYCLCGSEF KHKRSLKDHA RAFGHGHGAF GCNVDGGDGL EDDDEGAVSE  420
IEQDCAAGSC RSARSAR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462878585

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP096907	0.0	FP096907.1 Phyllostachys edulis cDNA clone: bphylf041f10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821697.1	1e-134	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-83	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A2S3I4H6	1e-132	A0A2S3I4H6_9POAL; Uncharacterized protein
STRING	Pavir.Fa00506.1.p	1e-119	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-79	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]