PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462878666

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HB-other

Protein Properties

Length: 221aa MW: 24312.8 Da PI: 6.2672

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462878666	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.5	7.2e-16	1	39	18	56
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +F+++++p++++r+ L+++lgL+ rq+k+WFqNrR+++k 462878666 1 MFKECPHPDENQRAALSRELGLEPRQIKFWFQNRRTQMK 39 69**********************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.1E-4	1	45	IPR001356	Homeobox domain
Pfam	PF00046	2.8E-13	1	39	IPR001356	Homeobox domain
PROSITE profile	PS50071	14.722	1	41	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.55E-13	1	47	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-15	1	47	IPR009057	Homeodomain-like
CDD	cd00086	5.12E-14	2	42	No hit	No description
PRINTS	PR00031	7.9E-5	12	21	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	16	39	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.9E-5	21	37	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MFKECPHPDE NQRAALSREL GLEPRQIKFW FQNRRTQMKA QHERQDNCFL RAENDKIRCE 60 NITMREALRN IICPNCGGPP IGEDFFDEQK LRMENARLKE ELDRVSSITS KYLGRPFTQM 120 PPVPSMSVSS SLDLSVGGMA GVPGLGSPSL DQLDLLGAAV SSSAGMGGSP SSCPWRGVNK 180 WMEFFPGIVS KAHTVDILVN GMCGGNESLI LGNAAVESLL L

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462878666

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT066813	1e-135	BT066813.2 Zea mays full-length cDNA clone ZM_BFb0073D09 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008649207.1	4e-92	homeobox-leucine zipper protein ROC8
Swissprot	Q69T58	1e-86	ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBL	A0A1D6LUT8	1e-111	A0A1D6LUT8_MAIZE; Homeobox-leucine zipper protein HDG11
STRING	Sb10g006820.1	3e-91	(Sorghum bicolor)
STRING	GRMZM2G004334_P01	7e-91	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15929	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	3e-62	homeodomain GLABROUS 11