PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462879177

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

M-type_MADS

Protein Properties

Length: 70aa MW: 8219.68 Da PI: 11.9809

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462879177	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92	2.9e-29	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++++l +s 462879177 9 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSQRLSHFS 58 79********************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.086	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.7E-37	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.01E-27	2	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.1E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SQRLSHFSGR 60 RRFVSLPLDR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-19	1	59	1	59	MEF2 CHIMERA
6byy_B	2e-19	1	59	1	59	MEF2 CHIMERA
6byy_C	2e-19	1	59	1	59	MEF2 CHIMERA
6byy_D	2e-19	1	59	1	59	MEF2 CHIMERA
6bz1_A	2e-19	1	59	1	59	MEF2 CHIMERA
6bz1_B	2e-19	1	59	1	59	MEF2 CHIMERA
6bz1_C	2e-19	1	59	1	59	MEF2 CHIMERA
6bz1_D	2e-19	1	59	1	59	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462879177

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU975181	5e-66	EU975181.1 Zea mays clone 483488 MADS-box protein AGL66 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021305672.1	1e-36	agamous-like MADS-box protein AGL66 isoform X4
Refseq	XP_021305673.1	1e-36	agamous-like MADS-box protein AGL66 isoform X4
Refseq	XP_021305674.1	1e-36	agamous-like MADS-box protein AGL66 isoform X4
Refseq	XP_021305675.1	1e-36	agamous-like MADS-box protein AGL66 isoform X4
Refseq	XP_021305676.1	1e-36	agamous-like MADS-box protein AGL66 isoform X4
Refseq	XP_021305677.1	1e-36	agamous-like MADS-box protein AGL66 isoform X4
Refseq	XP_021305678.1	1e-36	agamous-like MADS-box protein AGL66 isoform X4
Refseq	XP_021305679.1	1e-36	agamous-like MADS-box protein AGL66 isoform X5
Swissprot	Q9LM46	2e-31	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A1D6LVJ2	7e-37	A0A1D6LVJ2_MAIZE; Putative MADS-box transcription factor family protein
STRING	Pavir.Db01574.1.p	4e-36	(Panicum virgatum)
STRING	Sb10g007810.1	3e-36	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4953	33	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	7e-34	AGAMOUS-like 104

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]