PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462879293
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 113aa    MW: 12765.2 Da    PI: 6.5089
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462879293genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.83e-0968108446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +T+ E++l  + + + G++ W++Ia +++ gRt++++  +w+k
        462879293  68 FTEAEEDLVFRMHGLVGNR-WELIAGRIP-GRTAEEVEIFWYK 108
                      8******************.*********.***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.4E-764112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-1168108IPR009057Homeodomain-like
CDDcd001672.57E-868108No hitNo description
SuperFamilySSF466892.89E-868110IPR009057Homeodomain-like
PfamPF002493.9E-868108IPR001005SANT/Myb domain
PROSITE profilePS500906.24968110IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010091Biological Processtrichome branching
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MISDTRCPQV HPGKGLSLNH HEHSLTISGH SSPLLMDNSS GSQDKKSKAD GRHEAKEIDS  60
TAQNFIDFTE AEEDLVFRMH GLVGNRWELI AGRIPGRTAE EVEIFWYKKH QDK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462879293
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458170.11e-38MYB-like transcription factor ETC3
TrEMBLA0A2R4QNC52e-38A0A2R4QNC5_9POAL; MYB transcription factor
STRINGPavir.Eb02165.1.p2e-38(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52753157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53200.17e-23MYB_related family protein