PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462879467

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

G2-like

Protein Properties

Length: 403aa MW: 45426.3 Da PI: 7.9418

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462879467	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	86.6	2.4e-27	230	281	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFveav++L e+AtPk +l+lm+v+gLt++ +kSHLQkYR 462879467 230 KPRLRWTLELHERFVEAVNKL---EEATPKGVLKLMNVEGLTIYYIKSHLQKYRF 281 79*****************...9***************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.085	227	284	IPR017930	Myb domain
SuperFamily	SSF46689	4.48E-14	228	281	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-25	229	282	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-19	230	281	IPR006447	Myb domain, plants
Pfam	PF00249	3.8E-8	232	280	IPR001005	SANT/Myb domain
Pfam	PF14379	8.4E-21	290	333	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MSTQSVVAVK QFGGTDRMAH ICTAPQPSAH KLLNANSDQC GSTHNPESSN IKTEICTSNP 60 PKILPSDLQK CSPSSNPENP ISGISQTNFS EPILSSSSTF CTSMYSTSST NSMWCQQTRD 120 LPFLPHPPNC EQQQQQQTSS GQPSSPSSMF IGDPSSGGHD DAEPSDNPGD FLNLSGDASE 180 GSFHGERNVM AFNDQMEFQF LSEQLGIAIT DNEESPRLDL SASRAASCNK PRLRWTLELH 240 ERFVEAVNKL EEATPKGVLK LMNVEGLTIY YIKSHLQKYR FAKYLPETKE EALRMQMEVQ 300 KQLHEQLEVQ RQLQLRIEEH ARYLQKILEE QQKERTSLST RRRQLKKKNL NPQGTKILSQ 360 KRTLLQVHCP MAKIRILIWN ATHMRIKKNA KPQVNLEKES LCS

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MSTQSVVAVK QFGGTDRMAH ICTAPQPSAH KLLNANSDQC GSTHNPESSN IKTEICTSNP  60
PKILPSDLQK CSPSSNPENP ISGISQTNFS EPILSSSSTF CTSMYSTSST NSMWCQQTRD  120
LPFLPHPPNC EQQQQQQTSS GQPSSPSSMF IGDPSSGGHD DAEPSDNPGD FLNLSGDASE  180
GSFHGERNVM AFNDQMEFQF LSEQLGIAIT DNEESPRLDL SASRAASCNK PRLRWTLELH  240
ERFVEAVNKL EEATPKGVLK LMNVEGLTIY YIKSHLQKYR FAKYLPETKE EALRMQMEVQ  300
KQLHEQLEVQ RQLQLRIEEH ARYLQKILEE QQKERTSLST RRRQLKKKNL NPQGTKILSQ  360
KRTLLQVHCP MAKIRILIWN ATHMRIKKNA KPQVNLEKES LCS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-21	230	284	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-21	230	284	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-21	230	284	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-21	230	284	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-21	230	284	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-21	230	284	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-21	230	284	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-21	230	284	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462879467

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT038317	8e-32	BT038317.1 Zea mays full-length cDNA clone ZM_BFb0227D23 mRNA, complete cds.
GenBank	EU954590	8e-32	EU954590.1 Zea mays clone 1472551 hypothetical protein mRNA, complete cds.
GenBank	JX469978	8e-32	JX469978.1 Zea mays subsp. mays clone UT3338 G2-like transcription factor mRNA, partial cds.
GenBank	KP330483	8e-32	KP330483.1 Triticum aestivum MYB transcription factor SM153-1 mRNA, complete cds.
GenBank	KP330484	8e-32	KP330484.1 Triticum aestivum MYB transcription factor SM153-2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698680.1	1e-151	protein PHOSPHATE STARVATION RESPONSE 3
Swissprot	Q6YXZ4	1e-137	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	A0A0A9P2D7	1e-156	A0A0A9P2D7_ARUDO; Uncharacterized protein
STRING	Pavir.Aa03223.1.p	1e-153	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4526	37	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	3e-45	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]