PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462879545

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

G2-like

Protein Properties

Length: 375aa MW: 41046 Da PI: 7.1108

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462879545	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103	1.9e-32	275	329	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYR 462879545 275 KPRLRWTLELHERFVEAVNKLEGPEKATPKGVLKLMNVEGLTIYHVKSHLQKYRF 329 79****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.08	272	332	IPR017930	Myb domain
SuperFamily	SSF46689	4.3E-17	273	329	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-30	274	330	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.6E-24	275	329	IPR006447	Myb domain, plants
Pfam	PF00249	6.4E-9	277	328	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MSTQSVVAVK QFGGTDRMAR ICTAPQPSAH KLLNAKSDQC GSTHNPESSN IKTEICTSSP 60 PKILPSDLRT CSPSSNPENL ISGISQTNFS EPILSSSSTF CTSMHSTSST NSMWCQKTRD 120 LPFLPHPPKC EQQQQQQQTS SGQPSSPSSM FFGDLSSGGH DDAEHSDNPG DFLNLSGDAS 180 DDSFHGERNA KAFNDQMEFQ FLSEQLGIAI TDNEESPRLD VSLLSPLVSS VIVFSISAKL 240 ALFALLSYSD LKGSRSPGSP IKVQLSASRA ASCNKPRLRW TLELHERFVE AVNKLEGPEK 300 ATPKGVLKLM NVEGLTIYHV KSHLQKYRFA KYLPDTKEGA KATAATHRRT CKIFAEDIRR 360 TTEGENLLIH SEMYS

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MSTQSVVAVK QFGGTDRMAR ICTAPQPSAH KLLNAKSDQC GSTHNPESSN IKTEICTSSP  60
PKILPSDLRT CSPSSNPENL ISGISQTNFS EPILSSSSTF CTSMHSTSST NSMWCQKTRD  120
LPFLPHPPKC EQQQQQQQTS SGQPSSPSSM FFGDLSSGGH DDAEHSDNPG DFLNLSGDAS  180
DDSFHGERNA KAFNDQMEFQ FLSEQLGIAI TDNEESPRLD VSLLSPLVSS VIVFSISAKL  240
ALFALLSYSD LKGSRSPGSP IKVQLSASRA ASCNKPRLRW TLELHERFVE AVNKLEGPEK  300
ATPKGVLKLM NVEGLTIYHV KSHLQKYRFA KYLPDTKEGA KATAATHRRT CKIFAEDIRR  360
TTEGENLLIH SEMYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-26	275	332	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-26	275	332	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-26	275	332	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-26	275	332	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-26	275	332	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-26	275	332	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-26	275	332	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-26	275	332	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462879545

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698680.1	1e-132	protein PHOSPHATE STARVATION RESPONSE 3
Swissprot	Q6YXZ4	1e-119	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	A0A0A9P2D7	1e-137	A0A0A9P2D7_ARUDO; Uncharacterized protein
TrEMBL	A0A0A9Q0P8	1e-137	A0A0A9Q0P8_ARUDO; Uncharacterized protein
STRING	Si017191m	1e-131	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4526	37	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-41	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]