PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462879653

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HSF

Protein Properties

Length: 189aa MW: 20390 Da PI: 10.0052

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462879653	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	101.2	9.5e-32	31	122	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F+ k+++++ d++++ +++w +++nsfvv d+ f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++ weF+h+sF +g+++ll +i 462879653 31 FVAKTHQMVCDPRTDAFVRWGRENNSFVVADPAGFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRGQTHLLPRIV 118 9******************999*************************************999.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k+ 462879653 119 RRKK 122 *997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.9E-49	27	120	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	5.1E-35	28	120	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.28E-32	29	120	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.0E-15	31	54	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	6.2E-29	31	120	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.0E-15	69	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	70	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.0E-15	82	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MDGLHTELAL GLIRFGAGAG SCAEQLPTAP FVAKTHQMVC DPRTDAFVRW GRENNSFVVA 60 DPAGFSQLLL PCFFKHGNFS SFVRQLNTYG FRKVHPDRWE FAHESFLRGQ THLLPRIVRR 120 KKRGELGGGA SCSSSASSPS SGGGTRRRQR EGGAGLRASG GGAGLTNSTD LDTPVETPFP 180 FCLLGQGFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-21	31	120	29	129	Heat shock factor protein 1
5d5v_B	1e-21	31	120	29	129	Heat shock factor protein 1
5d5v_D	1e-21	31	120	29	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462879653

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069479	1e-126	AK069479.1 Oryza sativa Japonica Group cDNA clone:J023019J23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566902.1	8e-75	heat stress transcription factor C-1a
Refseq	XP_024314176.1	8e-75	heat stress transcription factor C-1a
Swissprot	Q6VBA4	7e-71	HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBL	I1HPK7	2e-73	I1HPK7_BRADI; Uncharacterized protein
STRING	BRADI2G44050.1	3e-74	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	2e-43	heat shock transcription factor C1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]