PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462879680
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 242aa    MW: 25603.5 Da    PI: 6.0351
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462879680genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.91.6e-2659117259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p v+++tY  +H h+
  462879680  59 SDPWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKLVERSPAKPGVLIVTYMADHCHP 117
                699***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182903.66E-2457119IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-2657119IPR003657WRKY domain
SMARTSM007741.6E-3058118IPR003657WRKY domain
PROSITE profilePS5081128.87459119IPR003657WRKY domain
PfamPF031062.7E-2260117IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MISFPAAAVA STSGSQSTAV APGRKAGART TRPKRSSKKS QLKKVVREMP VADGGVSSSD  60
PWAWRKYGQK PIKGSPYPRG YYKCSSMKGC MARKLVERSP AKPGVLIVTY MADHCHPVPT  120
QLNALAGTTR HSKPSAGEDR PASTSPKRHE QQQQGTAADD EAAAARCDAD SNEASTTTTA  180
PVAADCGGGV EELAAALADD DGEFWPAGMD LDELLAPVDD DFDFEHVLDD DDDGVLGRRL  240
SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-1839120280Disease resistance protein RRS1
5w3x_D1e-1839120280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462879680
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6769244e-97AY676924.1 Oryza sativa (indica cultivar-group) transcription factor WRKY03 (WRKY03) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458190.11e-112probable WRKY transcription factor 27
TrEMBLA0A1E5UWP31e-112A0A1E5UWP3_9POAL; WRKY transcription factor 22
STRINGSb03g028440.11e-112(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.14e-37WRKY family protein