PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462879788
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 106aa    MW: 11630 Da    PI: 12.1737
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462879788genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-201666256
        AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
               ++ GVr+++ +grWvAeI+d +    +r r +lg+f+tae+Aa+a+++a+++l+ge
  462879788 16 RFVGVRQRP-SGRWVAEIKDsV----QRVRLWLGTFDTAEDAARAYDEAARALRGE 66
               689******.7*********44....36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.1E-291674IPR001471AP2/ERF domain
PfamPF008472.7E-141666IPR001471AP2/ERF domain
PROSITE profilePS5103220.2841673IPR001471AP2/ERF domain
SMARTSM003801.2E-321679IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-211774IPR016177DNA-binding domain
PRINTSPR003672.0E-81728IPR001471AP2/ERF domain
CDDcd000182.77E-261774No hitNo description
PRINTSPR003672.0E-83955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MESGRTATVA AARARRFVGV RQRPSGRWVA EIKDSVQRVR LWLGTFDTAE DAARAYDEAA  60
RALRGENTRT NFADRCRHGH GAASRARLSK NLQHVIARAA AAGRAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1516811480Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462879788
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239429.12e-43dehydration-responsive element-binding protein 1C
SwissprotQ6J9S13e-29RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLA0A023INB11e-44A0A023INB1_HORVV; RAPT-4
STRINGSi032213m3e-42(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124292634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-17related to AP2 11
Publications ? help Back to Top
  1. Meng S, et al.
    Arabidopsis NRT1.5 Mediates the Suppression of Nitrate Starvation-Induced Leaf Senescence by Modulating Foliar Potassium Level.
    Mol Plant, 2016. 9(3): p. 461-470
    [PMID:26732494]