PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462880167

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WOX

Protein Properties

Length: 228aa MW: 25184.4 Da PI: 10.3497

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462880167	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.1	4e-20	56	118	1	57
TT--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r +R+t+t+eql++L+el++ r p+ae+++++++ l +++ ++V++WFqN++a+e++ 462880167 56 RGSRWTPTPEQLRILKELYYGcgVRSPTAEQIQRITAMLrqhgKIEGKNVFYWFQNHKARERQ 118 568***************7669***********************************97 PP
2	Wus_type_Homeobox	114.4	5.6e-37	58	120	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +RWtPtpeQ++iL+ely+ +G+r+P++e+iqrita+L+++Gkie+kNVfyWFQN+kaRerqk+ 462880167 58 SRWTPTPEQLRILKELYYgCGVRSPTAEQIQRITAMLRQHGKIEGKNVFYWFQNHKARERQKK 120 8**************999***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.977	53	119	IPR001356	Homeobox domain
SMART	SM00389	1.1E-6	55	123	IPR001356	Homeobox domain
CDD	cd00086	7.70E-8	56	120	No hit	No description
Pfam	PF00046	6.6E-18	56	118	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.34E-12	56	123	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-7	58	118	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010492	Biological Process	maintenance of shoot apical meristem identity
GO:0080166	Biological Process	stomium development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MQQQQQQKQV SAGEGMAANV GGRSGVSVCR PSGSRWTPTP EQLRILKELY YGCGVRGSRW 60 TPTPEQLRIL KELYYGCGVR SPTAEQIQRI TAMLRQHGKI EGKNVFYWFQ NHKARERQKK 120 RLTSLDVNAT PAGAADINHL GVFSLSPSSG TTSPSSTMGM YTGNGGTSAM QLDTSSHWAD 180 NTAMTTEGSC FLQVIVGLSN TLTRLHGREE HGRRHRRRDV AVGMDLVF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor required for the formation and development of tiller buds and panicles (PubMed:25697101). Required for tiller formation and female sterility (PubMed:27194802). Required for the early developmental stages of axillary meristem formation (PubMed:25841039). Plays a role in maintaining the axillary premeristem zone and in promoting the formation of the axillary meristem by promoting OSH1 expression (PubMed:25841039). Does not seem to be involved in maintenance of the shoot apical meristem (SAM) (PubMed:25841039). {ECO:0000269\|PubMed:25697101, ECO:0000269\|PubMed:25841039, ECO:0000269\|PubMed:27194802}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00265	DAP	Transfer from AT2G17950	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462880167

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by the cytokinin 6-benzylaminopurine. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM234745	9e-92	AM234745.1 Zea mays mRNA for WUS2 protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680535.1	4e-73	WUSCHEL-related homeobox 1B
Swissprot	Q7XM13	1e-43	WOX1_ORYSJ; WUSCHEL-related homeobox 1
TrEMBL	K3ZCE4	9e-72	K3ZCE4_SETIT; Uncharacterized protein
STRING	Si024219m	1e-72	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12465	31	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	6e-35	WOX family protein

Publications ? help Back to Top
Lu Z, et al. MONOCULM 3, an ortholog of WUSCHEL in rice, is required for tiller bud formation. J Genet Genomics, 2015. 42(2): p. 71-8 [PMID:25697101] Tanaka W, et al. Axillary Meristem Formation in Rice Requires the WUSCHEL Ortholog TILLERS ABSENT1. Plant Cell, 2015. 27(4): p. 1173-84 [PMID:25841039] Mjomba FM, et al. Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice. G3 (Bethesda), 2016. 6(7): p. 2013-21 [PMID:27194802]