PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462880380

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Protein Properties

Length: 161aa MW: 17078.2 Da PI: 9.3143

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462880380	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	89.5	2.6e-28	56	143	1	86
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+kv tpsdv+++ lv+pk++ae++ + ++ l++ed g++W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F++ 462880380 56 FDKVVTPSDVGNR--LVIPKQYAEKYfpldaaA--NDKGLLLSFEDAGGKQWRFRYSYWNSSQSYVMTKGWSRFVKEKHLVAGDTVSFYRGA 143 89*******75..9*******999643..346779**********************************************543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.0E-39	51	144	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.27E-28	52	142	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.661	54	156	IPR003340	B3 DNA binding domain
CDD	cd10017	3.62E-27	54	141	No hit	No description
Pfam	PF02362	3.2E-25	56	146	IPR003340	B3 DNA binding domain
SMART	SM01019	1.2E-21	56	156	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MADASLTSSM ALSSGDGAGA LGSGGASASA SSMALSSGDG AGLLGKGMDP EKEHMFDKVV 60 TPSDVGNRLV IPKQYAEKYF PLDAAANDKG LLLSFEDAGG KQWRFRYSYW NSSQSYVMTK 120 GWSRFVKEKH LVAGDTVSFY RGAGRARPPL HRLEAPPPNT P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	3e-50	51	144	3	98	B3 domain-containing transcription factor NGA1
5os9_B	3e-50	51	144	3	98	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462880380

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT088401	1e-119	BT088401.1 Zea mays full-length cDNA clone ZM_BFc0175G08 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794708.1	1e-53	B3 domain-containing protein Os02g0683500-like
Swissprot	Q7F9W2	1e-54	Y4814_ORYSJ; B3 domain-containing protein Os04g0581400
TrEMBL	A0A1E5UIE3	2e-52	A0A1E5UIE3_9POAL; B3 domain-containing protein
TrEMBL	A0A3L6TKR2	2e-52	A0A3L6TKR2_PANMI; B3 domain-containing protein
STRING	Pavir.J27608.1.p	1e-57	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01030.1	2e-50	B3 family protein

Publications ? help Back to Top
Je BI, et al. RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice. Plant Cell, 2010. 22(6): p. 1777-91 [PMID:20581303]