PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462880588
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 165aa    MW: 18182.5 Da    PI: 9.797
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462880588genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-142066148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     + +WT+ Ed  l+  vk++G+ +Wk+I++ ++ gR  k+c++r+ ++l
        462880588 20 KSAWTKSEDAVLLAQVKLYGPQNWKAISAALP-GRNSKSCRLRYCQHL 66
                     579*****************************.***********9986 PP
2Myb_DNA-binding41.23.7e-1375117347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ Ed +++++  ++ ++ W+tIa +++ gRt++ +k+rw+++
        462880588  75 AFTAKEDARILHYQSLFTNK-WATIAGYFP-GRTDNAIKNRWNSV 117
                      69******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.4791570IPR017930Myb domain
SuperFamilySSF466894.93E-2817114IPR009057Homeodomain-like
SMARTSM007171.0E-131968IPR001005SANT/Myb domain
PfamPF002496.7E-132066IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-192280IPR009057Homeodomain-like
CDDcd001672.88E-132266No hitNo description
SMARTSM007175.1E-1072120IPR001005SANT/Myb domain
PROSITE profilePS5129415.60874122IPR017930Myb domain
CDDcd001672.43E-975118No hitNo description
PfamPF002491.9E-1175118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-1781119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MAVPDEASVG GRAERQPMKK SAWTKSEDAV LLAQVKLYGP QNWKAISAAL PGRNSKSCRL  60
RYCQHLDPDV DAATAFTAKE DARILHYQSL FTNKWATIAG YFPGRTDNAI KNRWNSVLRK  120
QVQQQQTQHQ ASTVEMLVAS RTARLVSDGT TPSPAHCGDS GTCHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271812225128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462880588
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798530.15e-53myb-related protein 308-like
SwissprotQ9SN128e-30MYB77_ARATH; Transcription factor MYB77
TrEMBLA0A3L6SC901e-51A0A3L6SC90_PANMI; Uncharacterized protein
STRINGPavir.Hb01126.1.p4e-52(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.15e-32myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]