PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462880768

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Protein Properties

Length: 861aa MW: 94765.2 Da PI: 8.1385

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462880768	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.8	2e-18	356	455	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d sg+ W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++lv+++ 462880768 356 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDVSGKDWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEGKLVMGF 453 89************************555566778***********99899999999.*******************987.777777777 PP E- CS B3 97 fr 98 ++ 462880768 454 RK 455 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.96E-19	353	455	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.0E-29	353	458	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.79E-22	354	455	No hit	No description
PROSITE profile	PS50863	11.039	356	457	IPR003340	B3 DNA binding domain
SMART	SM01019	8.5E-21	356	456	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.5E-15	356	455	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.202	611	661	IPR011124	Zinc finger, CW-type
Pfam	PF07496	1.7E-10	616	658	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 861 aa Download sequence Send to blast
MAPTGSTWSD RHVGAISLDT RGFEQGIYCE TFHSEEGGWR NCETCGRRVH CGCIVSIHKY 60 QLRDAGGVDC AKCARNTRTA MAPPNPVWSP SMHVPQNVPD RKDNPVKTWR PPAGQISSQW 120 RQTNMWSVSS VQSDLQQRLA FEFDRPSGSE KLLPGRTFIQ AHERKFDDMH DRPTTPASMN 180 HLMRERDANG QPATLDPSYP YALYHREGPH PNCVNDPSHH GGENERRMAV PDASTGLDAG 240 FKHDSHHPSL LKDDQPSLSV GLPSNFASAN GPKDHIRIAP NQQQAQMASP PVPKTFYTMG 300 GKAYTYNDFP HQMSNGRPRM DAKARSQLLP RYWPRISDQE LQHLSGDSHS VVTPLFEKML 360 SASDAGRIGR LVLPKKCAEA YFPPISQPEG LPLKVQDVSG KDWIFQFRFW PNNNSRMYVL 420 EGVTPCIQSM QLQAGDTVTF SRIDPEGKLV MGFRKATNLS SEQEQTTKPA NGAPASSEAN 480 GKVSAPDSSP NAAVSRQNKV NTENNSSSPV EQPSASKMDK GGSSQKDGPG TGQSSPGPGK 540 RKATSVGQKI KRLRMDNEES MELKITWEEA QELLRPPPKA PSIVVVEGHE FEEYEEPPIL 600 GRKTYLVADK SGTTHQWAQC EDCSKWRKLP ADVLMPSKWT CSDNKRDPER SSCESVQEIS 660 MEELAELIPI KYGPGAKKLK GKIDPDTIDA SDGLDTLANL AILGEGEAIP SQPTTKHPRH 720 RPGCSCIVCI QPPSGKGPKH KQTCTCNVCM TVRRRFRTLM LRREKRKDTD SPRKKEAGQS 780 SEAVSRAGSV PPAATGASTT SSPQKADPNA DGPEDMAVDH KMTSSPVKNH IDLNIQPDRD 840 DEQSPKADAA GATRLLRDNP A

Sequence ? help Back to Top

Protein Sequence Length: 861 aa Download sequence Send to blast

MAPTGSTWSD RHVGAISLDT RGFEQGIYCE TFHSEEGGWR NCETCGRRVH CGCIVSIHKY  60
QLRDAGGVDC AKCARNTRTA MAPPNPVWSP SMHVPQNVPD RKDNPVKTWR PPAGQISSQW  120
RQTNMWSVSS VQSDLQQRLA FEFDRPSGSE KLLPGRTFIQ AHERKFDDMH DRPTTPASMN  180
HLMRERDANG QPATLDPSYP YALYHREGPH PNCVNDPSHH GGENERRMAV PDASTGLDAG  240
FKHDSHHPSL LKDDQPSLSV GLPSNFASAN GPKDHIRIAP NQQQAQMASP PVPKTFYTMG  300
GKAYTYNDFP HQMSNGRPRM DAKARSQLLP RYWPRISDQE LQHLSGDSHS VVTPLFEKML  360
SASDAGRIGR LVLPKKCAEA YFPPISQPEG LPLKVQDVSG KDWIFQFRFW PNNNSRMYVL  420
EGVTPCIQSM QLQAGDTVTF SRIDPEGKLV MGFRKATNLS SEQEQTTKPA NGAPASSEAN  480
GKVSAPDSSP NAAVSRQNKV NTENNSSSPV EQPSASKMDK GGSSQKDGPG TGQSSPGPGK  540
RKATSVGQKI KRLRMDNEES MELKITWEEA QELLRPPPKA PSIVVVEGHE FEEYEEPPIL  600
GRKTYLVADK SGTTHQWAQC EDCSKWRKLP ADVLMPSKWT CSDNKRDPER SSCESVQEIS  660
MEELAELIPI KYGPGAKKLK GKIDPDTIDA SDGLDTLANL AILGEGEAIP SQPTTKHPRH  720
RPGCSCIVCI QPPSGKGPKH KQTCTCNVCM TVRRRFRTLM LRREKRKDTD SPRKKEAGQS  780
SEAVSRAGSV PPAATGASTT SSPQKADPNA DGPEDMAVDH KMTSSPVKNH IDLNIQPDRD  840
DEQSPKADAA GATRLLRDNP A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	4e-64	334	463	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	762	774	REKRKDTDSPRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462880768

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002460861.2	0.0	B3 domain-containing protein Os07g0563300 isoform X2
Swissprot	Q0D5G4	0.0	Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBL	A0A1B6QF04	0.0	A0A1B6QF04_SORBI; Uncharacterized protein
STRING	Sb02g036430.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7490	36	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	1e-144	high-level expression of sugar-inducible gene 2