PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462880850

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Protein Properties

Length: 168aa MW: 18512 Da PI: 9.4487

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462880850	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.5	4.6e-22	26	84	33	90
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 ++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD++vF+++ e+ 462880850 26 GVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSHSTYgPEK 84 567999*********************************************87554444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	2.5E-4	12	93	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.3E-23	22	99	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-19	25	91	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	5.0E-19	26	79	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.942	29	94	IPR003340	B3 DNA binding domain
CDD	cd10017	3.92E-18	31	78	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MSPTAVDYSS SASTATTESG AAQLPGVLLN FEDGEGKVWR FRYSYWNSSQ SYVLTKGWSR 60 FVREKGLRAG DTIVFSHSTY GPEKQLFIDC KKNKSTPAAT DAAPSPSPME KPKDQAHVVV 120 RLFGVDIARD GCQKRGRPIE IALEQGQQFL KKQCMAQHHT PALGAFLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	3e-29	19	91	44	115	DNA-binding protein RAV1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462880850

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065008	9e-76	AK065008.1 Oryza sativa Japonica Group cDNA clone:J013001E21, full insert sequence.
GenBank	AP002913	9e-76	AP002913.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0480E02.
GenBank	AP014957	9e-76	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CT828886	9e-76	CT828886.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA058B11, full insert sequence.
GenBank	CU406271	9e-76	CU406271.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C113A09, full insert sequence.
GenBank	CU406451	9e-76	CU406451.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C110I16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004968155.1	3e-75	AP2/ERF and B3 domain-containing protein Os01g0141000
Swissprot	Q0DXB1	7e-58	Y2641_ORYSJ; B3 domain-containing protein Os02g0764100
Swissprot	Q9AWS0	2e-56	Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBL	K3XJ36	6e-74	K3XJ36_SETIT; Uncharacterized protein
STRING	Si001909m	1e-74	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP456	38	203

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	8e-33	related to ABI3/VP1 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]