PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462881195

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

M-type_MADS

Protein Properties

Length: 134aa MW: 15936 Da PI: 9.7755

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462881195	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.1	2.8e-24	45	94	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ rqv fskRr g++KKA+ELS LCda+va++++s+ g+ly ++s 462881195 45 RIEDRVSRQVRFSKRRSGLFKKAYELSELCDAQVALVVLSPAGRLYQFAS 94 8***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.7E-30	36	95	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	28.245	36	96	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.2E-26	38	58	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.31E-27	38	111	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.31E-33	39	106	No hit	No description
Pfam	PF00319	1.4E-24	45	92	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.2E-26	58	73	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.2E-26	73	94	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MEKDEVVWKA QQQQQPEEEE EENGWEKTTA ARRKKKKRGR VEMRRIEDRV SRQVRFSKRR 60 SGLFKKAYEL SELCDAQVAL VVLSPAGRLY QFASSNSSIE KIFDRYWDLA NTLNDLNIEA 120 RDSWIDFNIQ VKHK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	4e-16	38	96	3	61	Myocyte-specific enhancer factor 2B
1tqe_Q	4e-16	38	96	3	61	Myocyte-specific enhancer factor 2B
1tqe_R	4e-16	38	96	3	61	Myocyte-specific enhancer factor 2B
1tqe_S	4e-16	38	96	3	61	Myocyte-specific enhancer factor 2B
6c9l_A	4e-16	38	96	3	61	Myocyte-specific enhancer factor 2B
6c9l_B	4e-16	38	96	3	61	Myocyte-specific enhancer factor 2B
6c9l_C	4e-16	38	96	3	61	Myocyte-specific enhancer factor 2B
6c9l_D	4e-16	38	96	3	61	Myocyte-specific enhancer factor 2B
6c9l_E	4e-16	38	96	3	61	Myocyte-specific enhancer factor 2B
6c9l_F	4e-16	38	96	3	61	Myocyte-specific enhancer factor 2B
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	37	RRKKKKR
2	32	37	RKKKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269\|PubMed:17951465}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462881195

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820080.1	5e-54	MADS-box transcription factor 51-like isoform X1
Refseq	XP_025820081.1	5e-54	MADS-box transcription factor 51-like isoform X1
Refseq	XP_025820082.1	4e-54	MADS-box transcription factor 51-like isoform X2
Swissprot	Q9XJ61	2e-30	MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBL	A0A2T7D9Y5	6e-54	A0A2T7D9Y5_9POAL; Uncharacterized protein
STRING	Si014540m	2e-51	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11880.1	2e-26	AGAMOUS-like 14

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SL,Lee S,Kim HJ,Nam HG,An G OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol., 2007. 145(4): p. 1484-94 [PMID:17951465]