PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462881564

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WRKY

Protein Properties

Length: 243aa MW: 25998.2 Da PI: 8.0057

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462881564	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.5	1.2e-32	164	222	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+ 462881564 164 LDDGYRWRKYGQKAVKNSAHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 222 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.4E-33	150	222	IPR003657	WRKY domain
SuperFamily	SSF118290	2.75E-28	158	223	IPR003657	WRKY domain
PROSITE profile	PS50811	28.449	159	224	IPR003657	WRKY domain
SMART	SM00774	2.0E-38	164	223	IPR003657	WRKY domain
Pfam	PF03106	6.4E-26	165	222	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MENLQGDGDE AHALTSFPYF AVPSPPLVGP PASLSPDDQI QHGAFAAELQ QPAAACNNNH 60 LPLGGADQLM ATTAAPAPMV LPAMVDWSSL LQQASLMSPA AAVPGMQEAV RVDQSGENDG 120 GEAGGSGKEK AGKGGGDGRS SSSGKKKVSR PRFAFQTRSV NDILDDGYRW RKYGQKAVKN 180 SAHPRSYYRC THHTCNVKKQ VQRLAKDTSI VVTTYEGVHN HPCEKLMEAL SPILKQLQFL 240 SQF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-24	154	221	7	74	Probable WRKY transcription factor 4
2lex_A	6e-24	154	221	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462881564

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728244	1e-118	KJ728244.1 Zea mays clone pUT6521 WRKY transcription factor (WRKY22) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969857.1	1e-112	probable WRKY transcription factor 56
TrEMBL	A0A1E5UIW3	1e-121	A0A1E5UIW3_9POAL; Putative WRKY transcription factor 24
STRING	Si002751m	1e-111	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1100	38	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41570.1	1e-55	WRKY DNA-binding protein 24