PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462881738
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 318aa    MW: 35045.3 Da    PI: 5.8697
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462881738genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-10148196355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  462881738 148 NSHSLAERLRRKKISERMKLLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 196
                58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-17143212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-11143200No hitNo description
Gene3DG3DSA:4.10.280.101.1E-16145212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.44145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-8148196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-10151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MYSGQQSDQN PGAISGKEFL EANWNSVTMH QKMGFNSGPY GIGPYSMELE DQPGLCRSST  60
GTFSPNVQLS DEHSGGVKKR KGIDNCVALL QNVGDQQTEG SSQPERNSME EGNKKISPKM  120
QSKEDSSDGD GTKEDYVHIR AKRGQATNSH SLAERLRRKK ISERMKLLQD LVPGCNKITG  180
KAVMLDEIIN YVQSLQRQVE FLSMKLATVN PELGFDIEQI LSKQMMLSQD RHIAFYGADP  240
GSTSLVAQYN QGIMRQEMMC SVTNPVDVLH GTTHDVSTMN QMTAMWEGLQ NIPHMNFNPG  300
VAGDSGGTND TGSMKIEQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462881738
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981901.10.0transcription factor bHLH49
RefseqXP_004981902.10.0transcription factor bHLH49
RefseqXP_022678584.10.0transcription factor bHLH49
TrEMBLK4ACS80.0K4ACS8_SETIT; Uncharacterized protein
STRINGSi036685m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60333650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.37e-58bHLH family protein