PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462881741
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family TALE
Protein Properties Length: 191aa    MW: 21917.1 Da    PI: 8.2265
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462881741genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-091051392155
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                + +yps+ e+  LA+ +gL+++q+ +WF N+R ++
  462881741 105 RWPYPSEMEKIALAEATGLEQKQINNWFINQRKRH 139
                569*****************************885 PP
2ELK34.64e-125980122
        ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
               ELK+qLl+KY+gyLg+L++E++
  462881741 59 ELKRQLLKKYGGYLGNLRKELC 80
               9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037891.9E-95980IPR005539ELK domain
SMARTSM011882.6E-65980IPR005539ELK domain
PROSITE profilePS5121311.2435979IPR005539ELK domain
PROSITE profilePS5007112.0579142IPR001356Homeobox domain
SMARTSM003893.3E-1181146IPR001356Homeobox domain
SuperFamilySSF466899.41E-1982154IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-2684142IPR009057Homeodomain-like
CDDcd000861.95E-1191141No hitNo description
PfamPF059201.9E-1699138IPR008422Homeobox KN domain
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MVILPKERKV ELNASGVWHT RKFSEEKAGL GSFDDDQDEG SGMEAEEDLG IDPCSDDKEL  60
KRQLLKKYGG YLGNLRKELC KKMKKGKLPK EARQKLPSWW ELHYRWPYPS EMEKIALAEA  120
TGLEQKQINN WFINQRKRHW KLSEEMQFAV MDGLLPAPQN AALYVDARVV GATPAMVFAR  180
PEHGAHALWH G
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462881741
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9649491e-145EU964949.1 Zea mays clone 282742 KNOX1 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149876.12e-85KNOX1 domain containing protein
SwissprotO041344e-54KNAP1_MALDO; Homeobox protein knotted-1-like 1
TrEMBLA0A0A8YSP53e-85A0A0A8YSP5_ARUDO; Uncharacterized protein
STRINGSb01g009460.11e-83(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150631819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.15e-42KNOTTED-like from Arabidopsis thaliana