PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462881798
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family M-type_MADS
Protein Properties Length: 64aa    MW: 7387.59 Da    PI: 10.5329
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462881798genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.87.8e-25958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krien ++rq tf kRr g++KKA ELSvLCd++ ++++fs +gkly y 
  462881798  9 KRIENPTQRQSTFYKRRDGLFKKARELSVLCDVDLLLLLFSASGKLYHYL 58
               79*********************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.483161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-26262IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-24323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-243859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MGRGRSEIKR IENPTQRQST FYKRRDGLFK KARELSVLCD VDLLLLLFSA SGKLYHYLSP  60
TVPS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462881798
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033431e-66AP003343.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0042A10.
GenBankAP0149571e-66AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-66CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankHG6703061e-66HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969809.14e-39MADS-box transcription factor 32
RefseqXP_025818300.14e-39MADS-box transcription factor 32 isoform X1
RefseqXP_025818301.12e-39MADS-box transcription factor 32 isoform X2
SwissprotQ8S1513e-35MAD32_ORYSJ; MADS-box transcription factor 32
TrEMBLA0A368RAC85e-38A0A368RAC8_SETIT; Uncharacterized protein
TrEMBLA0A3L6R5R57e-38A0A3L6R5R5_PANMI; MADS-box transcription factor 32 isoform X1
STRINGPavir.Ea02667.1.p8e-39(Panicum virgatum)
STRINGPavir.Eb02653.1.p1e-38(Panicum virgatum)
STRINGSi002988m2e-38(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119233439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-15MIKC_MADS family protein
Publications ? help Back to Top
  1. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]