PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462881942
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 199aa    MW: 21812.1 Da    PI: 8.7753
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462881942genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53.1e-182166148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++T++Ed l+v+++++lG++ W++Ia++++ gRt++++k++w+++l
        462881942 21 RGNFTPDEDGLIVKLHALLGNK-WSLIAARLP-GRTDNEIKNYWNTHL 66
                     89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-9327IPR009057Homeodomain-like
SuperFamilySSF466897.94E-22473IPR009057Homeodomain-like
PROSITE profilePS5129428.0551670IPR017930Myb domain
SMARTSM007173.3E-162068IPR001005SANT/Myb domain
PfamPF002491.3E-162166IPR001005SANT/Myb domain
CDDcd001672.41E-132366No hitNo description
Gene3DG3DSA:1.10.10.605.3E-242867IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MLCGKSCRLR WINYLRPDLK RGNFTPDEDG LIVKLHALLG NKWSLIAARL PGRTDNEIKN  60
YWNTHLRRKL VNMGIDPVTH RPINDTKTAG GDGNVVAFQP PSPNMVKASA APRCPDLNLD  120
LCISPPSPFL SVEEEEDVKP VVKLQGSGHG GHAGRLCFGC SPLGLNNKGI ASDCSNCSSN  180
NHFLGLRIGM LEFRGLEMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-2037038105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-2037038105C-Myb DNA-Binding Domain
1msf_C3e-2037038105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462881942
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794073e-88HF679407.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB1 protein.
GenBankJQ2554773e-88JQ255477.1 Saccharum hybrid cultivar Co 86032 MYB42 (MYB42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822035.11e-81myb-related protein Zm38-like
SwissprotP200258e-71MYB38_MAIZE; Myb-related protein Zm38
TrEMBLA0A2S3I4H73e-80A0A2S3I4H7_9POAL; Uncharacterized protein
TrEMBLA0A2T7DAJ93e-80A0A2T7DAJ9_9POAL; Uncharacterized protein
STRINGSb07g024890.14e-78(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-55myb domain protein 4
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]