PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462882129
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 338aa    MW: 37323.9 Da    PI: 7.2216
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462882129genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.12.3e-25166267199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+ltpsd++++g +++ +++a+e+       ++ +++  +l+ +d++g +W++++i+r++++r++lt+GW+ Fv++++L +gD vvF   + +++el+
  462882129 166 FCKTLTPSDTSTHGGFSVLRRHANEClppldmtQLTPTQ--ELVAKDLHGMEWRFRHIFRGRPRRHLLTSGWSAFVSSKRLVAGDAVVFL--RGENGELR 261
                99****************************987777666..8************************************************..449999** PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                v+v+r+
  462882129 262 VGVRRA 267
                ***996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-38157294IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-41159281IPR015300DNA-binding pseudobarrel domain
CDDcd100175.89E-24165266No hitNo description
SMARTSM010193.0E-24166268IPR003340B3 DNA binding domain
PfamPF023629.3E-23166267IPR003340B3 DNA binding domain
PROSITE profilePS5086312.365166268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
VVTVDCFPPA RLPLPSSFQL PPSASAPDPW QMLAAAMEPS PTPQPASYSG DQLYSALWRA  60
CAGPLATVPR PGDLVFYFLQ GHIEQVEADT NQVVQNQTRL YNLPSKMLCR VLNVELKAEP  120
DTDEVYAQIM LMAEPERCLL GLEVAAAETA SSGSIATPPR PAVSSFCKTL TPSDTSTHGG  180
FSVLRRHANE CLPPLDMTQL TPTQELVAKD LHGMEWRFRH IFRGRPRRHL LTSGWSAFVS  240
SKRLVAGDAV VFLRGENGEL RVGVRRAMRQ LSNVPSLVIS SQSLHLEVLA TAWHGINTGH  300
MFTVYYKPRY GDTSDDVISS CGFYILMYLV VRLPCEKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1154432510281Auxin response factor 1
4ldy_B1e-1154432510281Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462882129
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971147.11e-149auxin response factor 4 isoform X1
SwissprotQ5JK201e-140ARFD_ORYSJ; Auxin response factor 4
TrEMBLK3XEZ71e-148K3XEZ7_SETIT; Auxin response factor
STRINGSi000340m1e-148(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-115auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]