PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462882351
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family LSD
Protein Properties Length: 176aa    MW: 18545.7 Da    PI: 8.4376
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462882351genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1443.6e-14731125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               C+gCr+lL YPrGApsV+Ca+C++V
  462882351  7 CHGCRNLLLYPRGAPSVCCAVCHAV 31
               ************************9 PP
2zf-LSD144.23e-144670125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               CggC+tlL+Y+r+A+ VRC++CdtV
  462882351 46 CGGCQTLLMYTRNATTVRCSCCDTV 70
               ************************9 PP
3zf-LSD150.92.6e-1684108125
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                Cg+C+t+L+YP+GApsV+Ca+C+++
  462882351  84 CGQCQTVLMYPYGAPSVKCAICNFI 108
                ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.3E-13434IPR005735Zinc finger, LSD1-type
SuperFamilySSF486951.0E-4787IPR011031Multihaem cytochrome
PfamPF069431.8E-11731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.8E-134473IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-114670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.8E-1281110IPR005735Zinc finger, LSD1-type
PfamPF069432.3E-1484108IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MQSQIVCHGC RNLLLYPRGA PSVCCAVCHA VTSVPPPGME MARLICGGCQ TLLMYTRNAT  60
TVRCSCCDTV NLVRQVSSIA HVNCGQCQTV LMYPYGAPSV KCAICNFITN VGVTTVRPLP  120
PALPVPSGNS YNVPSTSTPT NQSQNVTVVV ENPMTVDEKG KLVSNVVVGV TTGGKK
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462882351
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805781.11e-115protein LOL2-like isoform X2
SwissprotQ2QMB31e-101LOL2_ORYSJ; Protein LOL2
TrEMBLA0A0A9MMP51e-115A0A0A9MMP5_ARUDO; Uncharacterized protein
STRINGSb08g021100.11e-110(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.18e-57lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]