PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462882577
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 584aa    MW: 62434.1 Da    PI: 5.065
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462882577genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.11e-05329352226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                k ++C+f+   G C+ Gd+CkF+H+
  462882577 329 KVKPCHFYNH-GKCQQGDSCKFSHD 352
                899***7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0074327353IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.863327354IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-6327352IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5356382IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225356383IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-5358381IPR000571Zinc finger, CCCH-type
SMARTSM003560.096384407IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244386408IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
NPTGVESGDS APAPVDADFH RRKDVEKEAV AAGSSRRQET VSPVMDQPAV ANPTGVPGET  60
PQCSLEDADE LVVKSTCSKA GDGGEESGVG AGLLVEDEAL KSVKSCLEGE TDESMEAVGD  120
DDGRLLLDAM MTNFTGLIDD VGAGLVPEQR CAILGGELQN SNEESKQLGD GIEEDRPAGN  180
SGYGKVDGGG GFEEGEIEGE LQDLDAEESG DSEPADENAD GEEQGRDSVS KVSGAIESCV  240
HDTRCGNVHL TPEMCATRAQ AVSYDEVLDW NETPLPDDED IKPGKKRKRN LTEERKAKKT  300
KNKRIKRAQQ RIAEGVHKLK LQPVIKPKKV KPCHFYNHGK CQQGDSCKFS HDFIPSTKSM  360
PCKHFASGSC LKGDDCPFDH ELLKYPCHKY KSGVCFRGDK CKFSHVLSTT DGSSTTDVKK  420
SDAPLAFGKT NLTGQTGSQK TSSVQSGEPM VSAPSKQQHS ILKTLAGISI SSQGASTRIP  480
KGVQFLPLGR DGSNSSSVHQ DVLSVEKHRN ANGTRNQFVG HQAEGQKIVT QNDQKPVKPL  540
DVRNSLKEAT LLTDSTATPG SIHTQSEVSE ASRILQDFLF GVGS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462882577
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969019.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_022682856.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_022682857.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_022682858.10.0zinc finger CCCH domain-containing protein 7
SwissprotQ657B31e-162C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLA0A1E5UVI40.0A0A1E5UVI4_9POAL; Zinc finger CCCH domain-containing protein 7
STRINGPavir.Eb02489.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.25e-07C3H family protein
Publications ? help Back to Top
  1. Noller B,Fischer I
    Photodissociation dynamics of the 2-propyl radical, C3H7.
    J Chem Phys, 2007. 126(14): p. 144302
    [PMID:17444707]
  2. Ali MA,Dillstrom VT,Lai JY,Violi A
    Ab initio investigation of the thermal decomposition of n-butylcyclohexane.
    J Phys Chem A, 2014. 118(6): p. 1067-76
    [PMID:24344976]