PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462882598
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 240aa    MW: 26364 Da    PI: 9.717
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462882598genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.9e-06121143123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++Cgk F r  nL+ H r H
  462882598 121 FVCEICGKGFQRDQNLQLHRRGH 143
                89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.48E-6120143No hitNo description
SMARTSM003550.012121143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.6E-6121143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.614121143IPR007087Zinc finger, C2H2
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SMARTSM00355130164194IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.48E-6194210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MQVLPQQIAH PSLPIYDPLA KIQVRDQAKQ APSASLAAVH LMFHHHHQQQ LLQEQAAEAA  60
ADQDSGMSNL TSSASGPNNP PPPAPAASAG NKRKRSLPGN PDPDAEVVAL SPATLMATNR  120
FVCEICGKGF QRDQNLQLHR RGHNLPWKLK QRGTGKEAPR KKVYVCPEAS CVHHDPARAL  180
GDLTGIKKHF FRKHGEKKWK CDKCSKKYAV SDPSMAISFS HFTLFLDDDP SIHGSLTKDQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462882598
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9569261e-145EU956926.1 Zea mays clone 1577561 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969529.12e-89protein indeterminate-domain 7
SwissprotQ9LRW76e-72IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLK3XHB65e-88K3XHB6_SETIT; Uncharacterized protein
STRINGSi001287m8e-89(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.12e-62C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]