PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462882673
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 185aa    MW: 20420.3 Da    PI: 10.0844
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462882673genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.39.8e-31125183259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D ++WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+  dp ++++tYegeH+h+
  462882673 125 ADDHSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERDPADPAMLIVTYEGEHRHS 183
                599***********************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.1E-77493IPR018872Zn-cluster domain
PfamPF105335.9E-9101122IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.7E-32113183IPR003657WRKY domain
PROSITE profilePS5081129.712119185IPR003657WRKY domain
SuperFamilySSF1182909.55E-26122183IPR003657WRKY domain
SMARTSM007749.6E-36124184IPR003657WRKY domain
PfamPF031063.4E-26126182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MLTLDLMGGG YGGRAEEQAA AIQEAAAAGL RGMEHLITQL QLSSRAAGET TAPTSAAQPE  60
QVDCREVTDM TVSKKHRVKR TIRVPAISPK VADIPADDHS WRKKHRVKRT IRVPAISPKV  120
ADIPADDHSW RKYGQKPIKG SPYPRGYYKC STVRGCPARK HVERDPADPA MLIVTYEGEH  180
RHSNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-21112182271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250|UniProtKB:Q0JEE2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462882673
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250|UniProtKB:Q0JEE2, ECO:0000269|PubMed:15618416}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0392981e-78BT039298.1 Zea mays full-length cDNA clone ZM_BFc0004G13 mRNA, complete cds.
GenBankBT0425791e-78BT042579.1 Zea mays full-length cDNA clone ZM_BFb0345E21 mRNA, complete cds.
GenBankEU9669051e-78EU966905.1 Zea mays clone 298088 WRKY51 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
GenBankEU9717021e-78EU971702.1 Zea mays clone 369394 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142073.13e-51uncharacterized protein LOC100274230
SwissprotQ6IEN15e-50WRK51_ORYSI; WRKY transcription factor WRKY51
STRINGOMERI04G19410.11e-56(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.22e-46WRKY DNA-binding protein 11