PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462883251

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 245aa MW: 27820.4 Da PI: 8.6435

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462883251	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.1	2.8e-52	10	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL+ ++ ++ + ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ 462883251 10 VPPGFRFHPTDEELLYYYLRKKVSFEPIDL-DVIREIDLNKLEPWDLKDrcRIGTGPQdEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIFLGnA 108 69**************************.9***********943455444445*********************************9767 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 g+ +gl+ktLvfy+grap+g+ktdW+mheyrl 462883251 109 GRRIGLRKTLVFYTGRAPHGKKTDWIMHEYRL 140 888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-59	7	164	IPR003441	NAC domain
PROSITE profile	PS51005	58.666	10	164	IPR003441	NAC domain
Pfam	PF02365	1.0E-27	11	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MHPSGSPLSV PPGFRFHPTD EELLYYYLRK KVSFEPIDLD VIREIDLNKL EPWDLKDRCR 60 IGTGPQDEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGNAGR RIGLRKTLVF 120 YTGRAPHGKK TDWIMHEYRL DDGDNIEVPP VLEDGWVVCR VFKKKSIQRG FDQQPGMAAA 180 SDDEHQSFHS PVGATQVDQK QGLHYQLMHG GFPAFDPSMH LPQLTSPDSS AGPAFMSGTP 240 PTWRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-51	8	166	15	167	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-51	8	166	15	167	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-51	8	166	15	167	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-51	8	166	15	167	NO APICAL MERISTEM PROTEIN
4dul_A	4e-51	8	166	15	167	NAC domain-containing protein 19
4dul_B	4e-51	8	166	15	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462883251

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU953045	1e-145	EU953045.1 Zea mays clone 1377565 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827212.1	1e-144	NAC domain-containing protein 76-like
Swissprot	Q5Z6B6	1e-108	NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBL	A0A2S3GN97	1e-143	A0A2S3GN97_9POAL; Uncharacterized protein
STRING	Pavir.Ab01037.1.p	1e-144	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3461	37	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	7e-90	NAC family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]