PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462883510
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 179aa    MW: 20649 Da    PI: 7.7898
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462883510genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.43.6e-36271182102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+++ed++++++isw+++g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll++i+
     462883510  27 FLTKTYQLVEDPAVDDVISWNDDGSAFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKRLLCDIH 114
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     462883510 115 RRKA 118
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.4E-3919111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.0E-6023116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.12E-3624116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.2E-212750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.9E-3327116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-216577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-217890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MAAEQPAGEP PPPAPXXXXQ RSVPTPFLTK TYQLVEDPAV DDVISWNDDG SAFVVWRPAE  60
FARDLLPKYF KHNNFSSFVR QLNTYGFRKI VPDRWEFAND CFRRGEKRLL CDIHRRKALR  120
HAPEVKPEPM DTQHHHHDEH TSEPQAWPIY RPRPVYHPLR AGTAGSDRSG SDHDGSNSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-27711610129Heat shock factor protein 1
5d5v_B3e-27711610129Heat shock factor protein 1
5d5v_D3e-27711610129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462883510
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9752201e-118EU975220.1 Zea mays clone 484753 heat shock factor protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934470.11e-67heat stress transcription factor B-2b
SwissprotQ652B03e-65HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLA0A0E0EU172e-66A0A0E0EU17_9ORYZ; Uncharacterized protein
STRINGOMERI09G12730.11e-65(Oryza meridionalis)
STRINGXP_008800793.15e-66(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.12e-60HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]