PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462883939
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 782aa    MW: 84576.5 Da    PI: 5.5513
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462883939genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-20102158157
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  462883939 102 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 158
                688999************************************************995 PP
2START206.79.3e-652995192206
                HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
      START   2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                la  a++el+++a++++p+W         e +n+de+ + f+++ +      ++ea+r+s+vv+m++a+lve+l+d++ q+ + +     +a+tlev+s+
  462883939 299 LAVVAMEELLRMAQVDAPLWNAPGidgsgETLNEDEYARMFPRGIGpkqyeLKSEASRDSAVVIMTHANLVEILMDVN-QYATVFSsivsRAATLEVLST 397
                66779***************998899999**************999********************************.88888888888********** PP

                T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
      START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                g      galq+m+ e+q++splvp R+++fvRy++q ++g+w++vdvS+ds ++ +    v +++++pSg+li++++ng+skvtwvehv++++r++h++
  462883939 398 GvagnynGALQVMSVEFQVPSPLVPtRESYFVRYCKQNSDGTWAVVDVSLDSLRPSS----VLKCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRSVHNI 493
                ******************************************************965....8************************************** PP

                HHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 181 lrslvksglaegaktwvatlqrqcek 206
                ++ lv+sgla+ga++wv tl+rqce+
  462883939 494 YKLLVNSGLAFGARRWVGTLDRQCER 519
                ************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.1E-2086159IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-2388157IPR009057Homeodomain-like
PROSITE profilePS5007117.02299159IPR001356Homeobox domain
SMARTSM003891.1E-19100163IPR001356Homeobox domain
CDDcd000861.47E-19102160No hitNo description
PfamPF000464.2E-18102157IPR001356Homeobox domain
PROSITE patternPS000270134157IPR017970Homeobox, conserved site
PROSITE profilePS5084841.119289522IPR002913START domain
SuperFamilySSF559611.1E-35290521No hitNo description
CDDcd088758.36E-124293518No hitNo description
SMARTSM002345.4E-61298519IPR002913START domain
PfamPF018529.7E-54300519IPR002913START domain
Gene3DG3DSA:3.30.530.203.3E-6359515IPR023393START-like domain
SuperFamilySSF559611.51E-23540771No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MMIPVRHMPS MIGRNGVAAY GSSSALSLGQ PNLLDNQQLQ QALQQQHLLD QIPATTAESG  60
DNMMRSRGSE PLGDEFDSKS GSENVDGVSV DDQDPNQRPN KKKRYHRHTQ HQIQEMEAFF  120
KECPHPDDKQ RKELSRELGL EPLQVKFWFQ NKRTQMKNQH ERQENSQLRA ENEKLRAENI  180
RYREALSSAS CPNCGGPAAL GEMSFDEHHL RVENARLRDE IDRISAIAAK YVGKPMVSFP  240
VLSSPLAAAR AGVASPLDLG AVSAAYGAGA GDIFAGGAGE LLRGAAVQSD ADKPMIVELA  300
VVAMEELLRM AQVDAPLWNA PGIDGSGETL NEDEYARMFP RGIGPKQYEL KSEASRDSAV  360
VIMTHANLVE ILMDVNQYAT VFSSIVSRAA TLEVLSTGVA GNYNGALQVM SVEFQVPSPL  420
VPTRESYFVR YCKQNSDGTW AVVDVSLDSL RPSSVLKCRR RPSGCLIQEM PNGYSKVTWV  480
EHVEVDDRSV HNIYKLLVNS GLAFGARRWV GTLDRQCERL ASVMASNIPT SDIGVITSTE  540
GRKSMLKLAE RMVMSFCGGV TVSAAHQWTT LSGSGAEDVR VMTRKSVDDP GRPPGIVLNA  600
ATSFWLPVPP KRVFDFLRDE SSRSEWDILS NGGIVQEMAH IANGRDHGNC VSLLRVNSTN  660
SNQSNMLILQ ESCTDSSGSY VIYAPVDVVA MNVVLNGGDP DYVALLPSGF AILPDGPAGG  720
SMQGDGGVGT GGSLLTVAFQ ILVDSAPTAK LSLGSVATVN SLIACTVDRI KAAVSGESNN  780
PQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462883939
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976894.10.0homeobox-leucine zipper protein ROC2
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLA0A1E5WHW10.0A0A1E5WHW1_9POAL; Homeobox-leucine zipper protein ROC2
STRINGSi009409m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]