PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462884437
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GATA
Protein Properties Length: 178aa    MW: 19306.8 Da    PI: 6.0073
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462884437genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.16.9e-15115149133
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                C  Cg +   Tp++Rrgpdg++tLCnaCG+ yrk+
  462884437 115 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRKE 149
                6667777777***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.5E-5108162IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-10111151No hitNo description
Gene3DG3DSA:3.30.50.102.0E-11114149IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.4E-13115149IPR000679Zinc finger, GATA-type
CDDcd002023.42E-8125148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
PEPAPCPHAP NPSSNPEYPE KIAKIARNFA LDTSPVTPLV ESSSSSPFLH FFPIFGSLFL  60
MLLWHLQGGD AMMHMLVAPD GGGGELQPFA APPAEQELEL HRDNADDGLE GHVRCLRCGI  120
SGNATPHMRR GPDGPRTLCN ACGIAYRKEV QQTYYHGKQL QILHAREAAS ETCADSLP
Cis-element ? help Back to Top
SourceLink
PlantRegMap462884437
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0558182e-70BT055818.1 Zea mays full-length cDNA clone ZM_BFb0212N15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGMLOC_70827.22e-46(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150391318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.35e-12GATA-type zinc finger protein with TIFY domain