PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462884619
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 260aa    MW: 29004.2 Da    PI: 4.5902
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462884619genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-1748101456
                -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                ++++t+eq+++Le  Fe+ +  +  e++ eLA++lg+  rqV vWFqNrRa+++
  462884619  48 KRRLTAEQVRALELSFEEeKLRLEPERKSELARRLGIAPRQVAVWFQNRRARWR 101
                5689*************97899*******************************9 PP
2HD-ZIP_I/II118.34.3e-3848139393
  HD-ZIP_I/II   3 krrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  krrl++eqv++LE sFeee+ +LeperK+elar+Lg+ prqvavWFqnrRAR+++kqlE+d+++L++a+d+l + +++L +++++Lr+++++
    462884619  48 KRRLTAEQVRALELSFEEEKlRLEPERKSELARRLGIAPRQVAVWFQNRRARWRAKQLEQDFDRLRAAHDELLAGRDALLADNDRLRSQVTT 139
                  9***************************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.68E-1631105IPR009057Homeodomain-like
PROSITE profilePS5007116.60142103IPR001356Homeobox domain
SMARTSM003892.1E-1444107IPR001356Homeobox domain
PfamPF000467.3E-1548101IPR001356Homeobox domain
CDDcd000862.18E-1448104No hitNo description
Gene3DG3DSA:1.10.10.607.0E-1849110IPR009057Homeodomain-like
PRINTSPR000312.5E-67483IPR000047Helix-turn-helix motif
PROSITE patternPS00027078101IPR017970Homeobox, conserved site
PRINTSPR000312.5E-68399IPR000047Helix-turn-helix motif
PfamPF021837.8E-14103145IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MPVENGRRKR PFLTAHELEL GGVDMDDVDQ LCGYEYELHG APERSSAKRR LTAEQVRALE  60
LSFEEEKLRL EPERKSELAR RLGIAPRQVA VWFQNRRARW RAKQLEQDFD RLRAAHDELL  120
AGRDALLADN DRLRSQVTTL TEKLQGKEPA ALQPEEQQTT PSAATDTTAS MQAAVVFVQL  180
DEDQLRETTG CAVPAQGFAV RANSDSPESY FAGAPSPPSS SEGDCSEEGS ALLFPDAMLL  240
AAVEHGRGHA GEDSWEWFWN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462884619
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568507e-96AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462311.17e-84homeobox-leucine zipper protein HOX25
SwissprotA3BYC12e-70HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLC5XBF62e-82C5XBF6_SORBI; Uncharacterized protein
STRINGSb02g023650.13e-83(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.19e-35homeobox 1